Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03989 ATGCCAGATTCAGAGTCAAATTCAGATGTTTTCAGTGTTCGAATTGTCTCCATAGACCATTACATGGCATCGCCAATCCCCGCCATCGATATCTCTCACAGCACCTTCCATCGTGGAAAAGTGAACGAAGTTCCTGTAATTAGAGTTTATGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACATTCATGGAGCTTTACCTTATTTATATGTGCCGTGTTCAGATATACCACTCCAACTAGACCAAGAAGGTGATGCATACACCTACACGGTAGCTGCTTCTCTCGAGAAAGCCTTGAAGCTTAAAGGCAGTACTGGTTCATCGAGACAACATGTACATGGCTGCAGCCTTGTCCGAGCAAGGAAATTTTATGGCTATTGCTCATTTGAAGAGTTTTTTGTAAAGATTTACCTATATTATCCTCAAGATGTCTCTCGTGCAGCAAATCTTCTCTTGGCTGGTGCTGTTCTTAATAAAAGTGTACAGCCTCACGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTACACCTATCAAAGATGAGGTTTCGCCATCCCATGCCGGATTCTATTCACAAGAAGTCAGACATCAATAGCCAGCACAGAAAGGCAGATCCAGGTGCTGAGGCATGTTTAGAGTCAAAAATATGGATGTCTTCCATGATCTCATTCGACTGGATGTGGTTACTCCCTAGTGAATCTGGTGGTTCATCAAATGACAAGGCTCACAGTCCTAAGCGTCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTAGATGAGATTCTTAATCAGCAGTTGAAAATGTTTTCATCTCTCTCACAATCAAGCTCAAATGTCAACATGGTTCAATCACTTGTACCAATATGGGAGGAACAGCGAAAACGGTCGGGGATTCACGAGGCTACAATGCTTTCTGATTCTGGTAAACCACTACCAGAAGATGTCATGAAACTTCTCTCATCTGGTCTTGACTTTGAGAAAAAACTTATTCAATTGTGCAGTGAAGCCGAGACCACTTTATCTTGCACTCCTTTTGAGAAGGAACTCAGAGAAACAGACATAATCGGCTCAGCATCGCCACCAGCTTCATTGTGTGAAAATGCCAAATTGCTTGAGGAAGGGACCGGCACAAGTCTCAAGTTGTTGAAAATTGGTCAAATGGAATCAGCTGAAAAGATTGAAATGTTGGACATAAAGGATGCTGATATGGAAGCACAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCCGCAGAGGATATAAACTCCGATGATGAACTTGCTTGTGAAACAATCCTGAGTCCCTTGCCACCTGCTGCAACAATTGATAAGATGTTGGAGAAAGCAAATATGGCGTATGAGAGTGAGTCCCAGCAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAGTTAGACCTGCCAAAGAAAAAGCCTTCTCATTCCTTTGATCACAATTGTCCGATTGACGCTTTACCAGACAATATGATACCTCAAGTTGATGGTTCTAACGATGATGAATTCTCAAGTCCATGCGCTAGTTTGGCTGAAATCTCTTCTGCAGTTGAGATAAACAGTGAACACAAAAGAGCTTCTGAGCACCACTTACTGCACAATACTGACACAAGTACAGTCAACACAGATAAAAGGAATAGGCAATGGGGGTCTTTGCCTTTTTCCATGACCGGGAAGGTTAATAATGATGGAGAGCATGCTACCTCACAAGTGGCTCATCTGTTTGAACAAGAAACGGAAGATTCTGCTCTGTCAGATTACTTAACCAGGAATGAGGTTAAAAATAATACATATATTAAAAGAAATGTTGGAGAAGGTGCCTCAGATTCAAAAGAAGTACATAGTTTGGTTAACTGCTCGTTAAGGGACTTGATGAGGAGAAAGCGGTCCTATCGAGTTGAACATGACGAACGAGAATCTGGAACTGCAAAGAAGCTTAATTTGGACAGGCATGGGGGGACAAAAACATGCCTTTGGCCAAAACTTGAATTGGAAACAATGCAAACCGATGAAGTAGAAAAAGAACTCCAGAAAAATTCTGATCATGAAGTGAGAAGTCGTGATAATTTAGTGTGTCGGAAACAGTTGCTTCCATCAGGCAGTGACAGTTTTTTGAATATATCAAAAGATGAATGTTTAGGTCAACATGAAAGGGAGTATCTAGAAGCAAGTATGGTGTTGAAGAATTCCGCAAATCAAAGTTCTTCTTCAATGCATGAATGGCCGGTCCTGCTTGAAACTTCACATTCTGTTGATTCCATAGACAAATCTGTGGCTTGCAGGGAGAAAAACACCAAGGATAGAACAACTTATGAAAAACATGTAGCTTCTGATGCCTATACCCCAAATCCCTCTTTAGACACTCAGTTGAGAACTGATGATGATCATAAAGTCAGAGCTCCTGAGAGGTGTCAGCAAACTGATTCTGTTGCTTCAGGTAGTAGACAAAACTCATTAGTCGATGACGAAGTGTCGGGCAAAAGTAAGTGCATTGATAAAACTTCTAGTGGTAGCATATTTTTTGTGCAGCATGATCAGATGAAGTCTTACGAGCATGCTGTGGGAAAAAGTGCTGCAAGTGATGCAAGAGTATTTCTTAGTGAAAAGGTTGATAATCAAAAGCTGGATAAAAATTTGCTGTGCAAGACTGTTGGCTCAGAACCCATTGTTGATGACCTAAAGAGTAATCACATGAAATTAACTGAAGTGGTCATAGGCAATAGCTCTTTGGTTGACAAGAATCTTGAAAGTAATTTGTCCTTGCCAACCTACCCGAATAATTTACATTTGGACGAGGATGATGAAATGCCAGGGAACGCTCTGGATGTTTTTCTTCCTATTTCTGCAAGGAATTCCCAGAAACAGAAGGAACCTTGGAACAAGTGTGTTACTATTGAAACCCCCAGATCCTCTGGGACAAAAGGTGTTTCCACTTACTATCAAAATGATGGCTCTCACCTATACCTATTAACACCTAATATTTTGCCTCCTTCTGCTGGTTCTGTGCAAAGATGGCTATTTTGTGATGAAAGAGAACCTGATGCGGAGGACCAGGATGTACCTCAATGCACTTCTGGACCTCTTCTTAGGCATACTCCTGATCAAATGCGTCAAGAACCTGGTGCAAAGGACAAGGACATATCTAAATGCGCCTCTGGACCTACTCTTAGGCCTGAGCTGCATCAAGATACAGAAAAGAAGCTTCCATGCATTAGTGAAGGACAAACAGAAAGAATAAAAGCATATATGGATCGCTCTCGAGATATTTCTCAGATATCAGGCCCTGGTGAGAAATCAAGTTTTACCCCTCTAAGTCAAATTGGATTTCAGGATCCGGCAAGTGTTGGCCATGGACAACAATTGACATTACTTAGTATAGAGGTGCTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGATGGCGTAAATATTGTAGCTCTTGGTTTTCAGAACGATTGTGATGCTACTATTGAAGTTCTAGTTCTTTTGCATAGTAAATTTGTACCTTGTCAGAGAAGTCTTGATGGTCTATCAGACTGCAAAGTACTGAACTTCACTGATGAAAAGCACCTGCTTAAAGAATTCACGAAGATTGTGTCTTCATCTGACCCGGATATATTGATGGGTTGGGAAATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTTGGATTACTTAATGATTTGTCTCGCACTCCCTCTAATTCTTGGATTAATTCTCAAGACATCAAAACATCTGAGAAAAGTATCTTGGAACCGGACATCCCAGATACTCCTAGTCTAGATTGTTGTGCACCAGAAAGTTCAATAATTGAGGATGAATGGGGACGGACACATGCTAGCGGAGTTCATGTTGGTGGAAGAATTGTCCTTAACTTATGGAGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCAGTTGAAGCTGTTGCTGAAGCTGTATTGAGGCGGAAAGTTCCTTCACTTAAACACAATGTGCTGACAAAGTGGTTTTCAAGGGGTCCAGGGCAAGCAAGATATCAGTGTATCAAATATATTGTGGACAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGCGTCTTTGGAATAGACTTCTTTTCTGTTCTTTCTCGAGGCTCACAATACCGTGTTGAATCCATGTTTTTGAGGTTGGCCCACACACAAAACTACGTTGCTATCTCGCCTGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAATGCCTTCCCCTAGTAATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTTGTACTTGACTTCCAATCTTTATATCCGTCAATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGTGCCATCAAAGACTAATACACTTGGGGTTAGTCCATTTGTACCGGAGCAACATATTCTTCAGGATTTAAAAGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCAAAGAGGTGTACTTCCCCGCCTATTGGAAGAAATTTTATCAACTAGAATAATGGTAAAACAAGCAATGAAAAAGTTATCTCCTTCAGAGCAAGTCCTTCAGCGGATATTTAACGCAAGACAGCTTGCTTTGAAGCTCATATCAAATGTAACATATGGTTATACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGCATTGTTCAATGTGGACGCTGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTTCTTAAAGGACGCACTGTCAAAGAGGCCTTCCAAATTGGGAGTGAGATTGCTTCTGCTATCACTGCTATGAATCCTAGTCCCGTCACCTTGAAGATGGAGAAAGTTTATCACCCGTGTTTCCTAATTACTAAAAAGCGATATGTTGGCTACAGTTATGAGAACCCCGATCAAATTGAACCTGTTTTTGATGCCAAAGGTATTGAAACAGTACGCAGGGACACATGTGAAGCAGTTGCAAAGATAATGGAGCAGTCTATGAGACTTTTTTTTGAGCACCAGAGTTTATTGGAGGTAAAGACTTATTTGCAGCGTCAATGGAAGAGGATTCTTTCAGGCAGACTTTCCCTTAAGGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCGTCACTTCCTCCTGCTGCAATTGTTGCAACGAAGGCTATGAGGGTTGATCGTAGGGCTGAACCACGTTATGCAGAGAGAATACCTTACATTGTAATCCATGGAGAGCCTGGAGCCCGCCTAGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCACCATTCAGAATAAATGATTTATATTACATTAATAAACAAATAATACCGGCTTTACAGCGAGTATTTGGGCTTGCTGGTGCTGACCTGAACCAGTGGTTTGCAGAGATGCCTCGTCCTGTAAGAGAAGCTTCTGTAAAGCATGCATTCACTCCAAACTTCCAACGGACCAGAATTGATTATTACTATCTCTCAAAACATTGTGTACTCTGTGGTGGGTTGGTCCAGGCATCAGCCCGTTTATGCAGTCAATGTTCTGAAAATGAGGTGGCTGCTGCGATGGCAGTGATTGGTAAAACTGCAAAGTTGGAGCAAGAGATGCAACACCTTGTATCTATATGTCAACATTGTGGAGGCGGTGATAGGCTTCTCGAAAGTGGTGTGAAGTGCATATCGATTTCGTGCCTGGTGTTTTATGAGAGGCGAAAAGTTCAAAAAGAGCTACTAGCCGCCACCCATGTTGCTGCAGATAAAGGCTACTATCCAAGATGCACGGTAGAATGGTTTTGA 6000 0.4142 MPDSESNSDVFSVRIVSIDHYMASPIPAIDISHSTFHRGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYLYVPCSDIPLQLDQEGDAYTYTVAASLEKALKLKGSTGSSRQHVHGCSLVRARKFYGYCSFEEFFVKIYLYYPQDVSRAANLLLAGAVLNKSVQPHESHIPFILQFLVDYNLYGMGHLHLSKMRFRHPMPDSIHKKSDINSQHRKADPGAEACLESKIWMSSMISFDWMWLLPSESGGSSNDKAHSPKRQSICELEGDTSVDEILNQQLKMFSSLSQSSSNVNMVQSLVPIWEEQRKRSGIHEATMLSDSGKPLPEDVMKLLSSGLDFEKKLIQLCSEAETTLSCTPFEKELRETDIIGSASPPASLCENAKLLEEGTGTSLKLLKIGQMESAEKIEMLDIKDADMEAQNLLKWLATSQAAEDINSDDELACETILSPLPPAATIDKMLEKANMAYESESQQECQDILDSIDDMLELDLPKKKPSHSFDHNCPIDALPDNMIPQVDGSNDDEFSSPCASLAEISSAVEINSEHKRASEHHLLHNTDTSTVNTDKRNRQWGSLPFSMTGKVNNDGEHATSQVAHLFEQETEDSALSDYLTRNEVKNNTYIKRNVGEGASDSKEVHSLVNCSLRDLMRRKRSYRVEHDERESGTAKKLNLDRHGGTKTCLWPKLELETMQTDEVEKELQKNSDHEVRSRDNLVCRKQLLPSGSDSFLNISKDECLGQHEREYLEASMVLKNSANQSSSSMHEWPVLLETSHSVDSIDKSVACREKNTKDRTTYEKHVASDAYTPNPSLDTQLRTDDDHKVRAPERCQQTDSVASGSRQNSLVDDEVSGKSKCIDKTSSGSIFFVQHDQMKSYEHAVGKSAASDARVFLSEKVDNQKLDKNLLCKTVGSEPIVDDLKSNHMKLTEVVIGNSSLVDKNLESNLSLPTYPNNLHLDEDDEMPGNALDVFLPISARNSQKQKEPWNKCVTIETPRSSGTKGVSTYYQNDGSHLYLLTPNILPPSAGSVQRWLFCDEREPDAEDQDVPQCTSGPLLRHTPDQMRQEPGAKDKDISKCASGPTLRPELHQDTEKKLPCISEGQTERIKAYMDRSRDISQISGPGEKSSFTPLSQIGFQDPASVGHGQQLTLLSIEVLAESRGDLLPDPQFDGVNIVALGFQNDCDATIEVLVLLHSKFVPCQRSLDGLSDCKVLNFTDEKHLLKEFTKIVSSSDPDILMGWEIQGSSLGFLAERASHLGFGLLNDLSRTPSNSWINSQDIKTSEKSILEPDIPDTPSLDCCAPESSIIEDEWGRTHASGVHVGGRIVLNLWRLIRGEVKLNLYSVEAVAEAVLRRKVPSLKHNVLTKWFSRGPGQARYQCIKYIVDRAKLNLEILNQLDMVNRTSELARVFGIDFFSVLSRGSQYRVESMFLRLAHTQNYVAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVPSKTNTLGVSPFVPEQHILQDLKDQILLTPNGVMFVPSKVQRGVLPRLLEEILSTRIMVKQAMKKLSPSEQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRCTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTVKEAFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLITKKRYVGYSYENPDQIEPVFDAKGIETVRRDTCEAVAKIMEQSMRLFFEHQSLLEVKTYLQRQWKRILSGRLSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDRRAEPRYAERIPYIVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLAGADLNQWFAEMPRPVREASVKHAFTPNFQRTRIDYYYLSKHCVLCGGLVQASARLCSQCSENEVAAAMAVIGKTAKLEQEMQHLVSICQHCGGGDRLLESGVKCISISCLVFYERRKVQKELLAATHVAADKGYYPRCTVEWF 1999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03989 1999 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 6 1992 IPR030559 GO:0006281|GO:0016035|GO:0019985
Mepo3g03989 1999 ProSitePatterns DNA polymerase family B signature. 1632 1640 IPR017964 GO:0000166|GO:0003676
Mepo3g03989 1999 Gene3D - 1707 1872 IPR042087 -
Mepo3g03989 1999 Pfam DNA polymerase family B, exonuclease domain 1200 1291 IPR006133 -
Mepo3g03989 1999 Pfam DNA polymerase family B, exonuclease domain 55 195 IPR006133 -
Mepo3g03989 1999 FunFam DNA polymerase 1707 1875 - -
Mepo3g03989 1999 FunFam DNA polymerase zeta 1532 1591 - -
Mepo3g03989 1999 Gene3D Helix hairpin bin 1531 1591 - -
Mepo3g03989 1999 CDD DNA_polB_zeta_exo 1137 1387 - -
Mepo3g03989 1999 SUPERFAMILY Ribonuclease H-like 35 1412 IPR012337 -
Mepo3g03989 1999 Pfam DNA polymerase family B 1406 1853 IPR006134 GO:0000166|GO:0003677
Mepo3g03989 1999 Gene3D - 1169 1448 IPR036397 GO:0003676
Mepo3g03989 1999 MobiDBLite consensus disorder prediction 820 840 - -
Mepo3g03989 1999 Pfam C4-type zinc-finger of DNA polymerase delta 1898 1971 IPR025687 -
Mepo3g03989 1999 Gene3D DNA Polymerase, chain B, domain 1 29 196 - -
Mepo3g03989 1999 SUPERFAMILY DNA/RNA polymerases 1452 1865 IPR043502 -
Mepo3g03989 1999 Gene3D Palm domain of DNA polymerase 1451 1696 IPR023211 -
Mepo3g03989 1999 FunFam DNA polymerase 30 196 - -
Mepo3g03989 1999 SMART polmehr3 1138 1644 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mepo3g03989 1999 FunFam DNA polymerase 1147 1448 - -
Mepo3g03989 1999 MobiDBLite consensus disorder prediction 824 840 - -
Mepo3g03989 1999 CDD POLBc_zeta 1413 1861 - -
Mepo3g03989 1999 PRINTS DNA-directed DNA-polymerase family B signature 1465 1478 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mepo3g03989 1999 PRINTS DNA-directed DNA-polymerase family B signature 1574 1586 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mepo3g03989 1999 PRINTS DNA-directed DNA-polymerase family B signature 1630 1638 IPR006172 GO:0000166|GO:0003676|GO:0003887
Mepo3g03989 1999 MobiDBLite consensus disorder prediction 1031 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03989 Mepo-Chr3 49277007 49291749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03989 1176 1981 Core DNA Replication Machinery Family AT5G63960 28.810 2.92e-87 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03989 K02350 - gmx:100777934 2970.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03989 3 49277007 49291749 Mepo3g03989 3 49277007 49291749 ECH