Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03961 ATGTTTAACAATATAATTTCAAACGTGCTTCAGGAGAAAATGAGTCGCCGATCAAGTCAAACAATATATGTAGGCAATCTTCCTGGTGACATTCGTTTGAGAGAAGTAGAGGATCTTTTCTACAAGTTCGGTCCTATCGTTGACATTGAATTGAAGATTCCTCCAAGACCACCGGGTTATGCTTTTGTGGAGTTCGAGGATGCTCGTGATGCTGAAGATGCAATTCGTTATCGAGATGGATACAAGTTTGATGGCTTTCGATTAAGAGTTGAACTTGCACATGGTGGGCGGGGATATTCATCATCAGTAGACCGCTATAGTAGTTATAGTAGTGGTAGCCGTGGAGTTTCCAAGCATTCTGAGTATCGTGTTTTGGTCACTGGATTACCTCCTTCGGCTTCATGGCAAGACCTGAAAGATCACATGCGCAGAGCTGGTGATGTATGTTTCTCTCAAGTTTTCCGTGACCGAGGTGGCATGACTGGGATAGTGGAGTATACAAATTATGAAGATATGAAATATGCTATTAGAAAACTTGACGACTCAGAATTCCGAAATGCGTTCTCTCGGGCATACATACGAGTGAGGGAATATGATCGACGGAGATATTCTAGGAGTCCCAGTTGTGATACAAGGAGGAGTTATTCTAGAAGCCCGAGCCGCAGTCCATATATGTCACGAAGTCGAAGTCGCAGTCAAAGTTATAGCTATAGTAGCAAGAGCAGCAGAAGCTTGTCTCCAAAAGTGAAACGCACTCGGCGGTCTTTATCCCGTTCAAGGTCATTGTCAAGATCAGAATCTGCAAGTTCATCTCCTGAACCTCGCATGAGCCGAAGTCCAAGGAGCTTATCACAATCTCGTTCACCTTCGGTGAGATCTGAACGCAGCCAATCTGTCAACTCTGGAGACCGTTATTGA 918 0.4423 MFNNIISNVLQEKMSRRSSQTIYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAEDAIRYRDGYKFDGFRLRVELAHGGRGYSSSVDRYSSYSSGSRGVSKHSEYRVLVTGLPPSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVEYTNYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDRRRYSRSPSCDTRRSYSRSPSRSPYMSRSRSRSQSYSYSSKSSRSLSPKVKRTRRSLSRSRSLSRSESASSSPEPRMSRSPRSLSQSRSPSVRSERSQSVNSGDRY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03961 305 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 12 288 - -
Mepo3g03961 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 95 IPR000504 GO:0003723
Mepo3g03961 305 SUPERFAMILY RNA-binding domain, RBD 19 189 IPR035979 GO:0003676
Mepo3g03961 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 186 IPR000504 GO:0003723
Mepo3g03961 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 89 IPR000504 GO:0003723
Mepo3g03961 305 MobiDBLite consensus disorder prediction 202 305 - -
Mepo3g03961 305 MobiDBLite consensus disorder prediction 209 245 - -
Mepo3g03961 305 Gene3D - 7 121 IPR012677 -
Mepo3g03961 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Mepo3g03961 305 MobiDBLite consensus disorder prediction 261 305 - -
Mepo3g03961 305 SMART rrm1_1 123 192 IPR000504 GO:0003723
Mepo3g03961 305 SMART rrm1_1 21 91 IPR000504 GO:0003723
Mepo3g03961 305 Gene3D - 122 199 IPR012677 -
Mepo3g03961 305 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 14 121 - -
Mepo3g03961 305 FunFam serine/arginine-rich splicing factor SR34A-like 122 199 - -
Mepo3g03961 305 CDD RRM2_SF2_plant_like 122 197 - -
Mepo3g03961 305 CDD RRM1_SF2_plant_like 21 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03961 Mepo-Chr3 49047713 49053296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03961 16 93 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 1.46e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03961 K12890 - zju:107411848 315.079