Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo3g03930 | ATGGTAAAGGGAAGAAAGTTTAGTAGCAAACGTGATTTGAGAAAGAGGGTTAGGTCAAAGGGGAGCGGGTCTGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCTGGGAATGTGTCTGATTGTCCAGAGGATGATTGTTTTTCTTTGGATGGATGTGCCGCTGAGGATAGTTTTGATGGGTTTATAGAAGACGGCGATTCGGAAAAGGAGGTGATTCAACGGGTGACGAAATTTAATAGATCAAGGGCTAAAACTGGTGTAAGGCGTCAGCGGACTAATGTAAGTAAAGCCTCAAGGAAGAGACAGAGGGTTACTTATTTAGAACAACCAGAAGAAGAAGAAGAACTAGATGAAGAAAATGGAGACGAAGAGGAAGAAGTAGAAGAAGAGGAGGAGGAGGAAGAAGAAGATGATGATGATTACAATGATGTTGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAGTGGAAGTGGAAGAGGAAGAGGAAGAAAAAGAAGAAGTGGAAGAGGTAGGTGGAAATGATGAGGATGATGAATTTAAACCAGAGGAAGAAGATTTCACAGATGAGGAGGAAGAAGAAACAAGGGGCAGAAAGAAGAAAAAGGATAATTCCATTTATGAAGACGAGGAATTTAAACCGGAGGACGAAGATTACACAGATGAGGAGGAAGAAGAAACAAGGCGCATTAAGAAGAAAAATAATGGCACGAAGATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCAACTTCTAGCAGAGGTCGAAAAAGGAGTGGTTCTAGAGTTTCAAAGAAGCCCAAGAGAAAGAGAAGACGAAAGAATGGAGGATCAAGGAGGAAAATACAGTGTGATGATGCAGATGATTTTTTGGATAATGTCCCAGCCATCAGAACAAATAGCAGAAAGAGATCAGTCCTGAAAAGGAGAAGGGTTATCCTTGAAGATGCCAATTCCGGCTCAGATTGCGAGTCTAGACCATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCCGTGGAGTTGTGTGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGGAAAATGAAGTGGTTGGACTATATGAAGATCTACATCAGCAATGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAAGGTAAGGAAAAAGTAGAGGACTTGAAGAGTGAGGTGGGAAAACAGGTGTGTGGAATTTGTCTGTCTGAGGAAAATAAAAGAAGAGTAAGGGGAGTACTAAACAGCTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTTGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCCAAACAATCAGTAAGCCTGCACGATCAACAACAGCGGAAGAGGCGGTGATACAAGTGCCCGAACGCGATCAGGTTTATCAGCCAACTGAAGAAGAACTCAGGAGCTACATTGATCCATATGAGTCAGTTATGTGTTCAGAGTGTCATCTAGGTGGAGACGATGGCCTCATGCTACTCTGTGATATATGTGATTCCCCTGCACACACTTATTGTGTTGGTTTGGGGAGAGAAGTACCTGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAATCTGATTTAAGAGCGGCAACTCAAAGCCTGCCTTCCCGGCCATCACCTGTTCATATACGAGAAAGTATAGACCTGAACCTGATGTCTTCACCTCATACATCTTTTAGTCAAGGGTTCGGGCATCATTCATCTTCTAGATTTTCTGGCAGAAGTATCGAAGGAGCTTCTCCAATGTCTGGAGGTGGGGCACCAACTTTATCAGAGAGACGGTGGATACACCGTCAAGTTCAGCAGCTACAAATTCAGCAGTTACGTTCAATTGATAGAATGGCTTCTACAACTGGCAGAACTAACGGTGTTTCAGCTACCGGTACAGTAAGTAACTTGAATAGCTCTGAAATTAATAGGGAACCAAGTTCTCAACATATAAGAACACAGGACGTAGGAACATCCTATCACACATTTTTTGAGGAGAGGTTAGGCAACAACATCTCTCCATTTATGCAGAATGGAGACCCCTTCTCCGTAAGAATGAGCAATTCAAGGGGCCCAGTGGTTCAGGATTCAACCATGTTTTCGAACGGGCCTGTGAGTGCAGCTATATGGCCTGGAATTTTGGGGACATCGACCTTATCAGATTATGGACCAATCCACCCATGCAGCAGCAGATCAAACATTGTCACTGAGGTTGGTATGCCTGCTACTGTCAAAGAAGAAGATAACTTGCACATTTTAAAGGAGCAATTGCAGTCAATGGTTAAAAGTCATTTGAAGAGATTGTCTCAAGATGCTGATTTGGGTTATAGTACTTTCAAGGACATTGCAAGGAGTTCTACGCATACCATACTTGCTGCTTGTGGACTCGAGCACAAGACGAGTGAGGTTTGTACTGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAATGAGTATGATTAAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGTATTTTGGACACAAGAATGTCTTCACAGTGGTTACGACTAGGACTTTAG | 2694 | 0.431 | MVKGRKFSSKRDLRKRVRSKGSGSDDSDEDYVVSDDAGNVSDCPEDDCFSLDGCAAEDSFDGFIEDGDSEKEVIQRVTKFNRSRAKTGVRRQRTNVSKASRKRQRVTYLEQPEEEEELDEENGDEEEEVEEEEEEEEEDDDDYNDVDEEEEEEEEEEEEEVEVEEEEEEKEEVEEVGGNDEDDEFKPEEEDFTDEEEEETRGRKKKKDNSIYEDEEFKPEDEDYTDEEEEETRRIKKKNNGTKMGKKKALKKRVSATSSRGRKRSGSRVSKKPKRKRRRKNGGSRRKIQCDDADDFLDNVPAIRTNSRKRSVLKRRRVILEDANSGSDCESRPSDYEFTISEEEKEQVREAVELCGNIRRNLRRASLRMENEVVGLYEDLHQQWKPPARKGKEKIEESQGRKGKEKVEDLKSEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLCKQRFQTISKPARSTTAEEAVIQVPERDQVYQPTEEELRSYIDPYESVMCSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQESDLRAATQSLPSRPSPVHIRESIDLNLMSSPHTSFSQGFGHHSSSRFSGRSIEGASPMSGGGAPTLSERRWIHRQVQQLQIQQLRSIDRMASTTGRTNGVSATGTVSNLNSSEINREPSSQHIRTQDVGTSYHTFFEERLGNNISPFMQNGDPFSVRMSNSRGPVVQDSTMFSNGPVSAAIWPGILGTSTLSDYGPIHPCSSRSNIVTEVGMPATVKEEDNLHILKEQLQSMVKSHLKRLSQDADLGYSTFKDIARSSTHTILAACGLEHKTSEVCTVPPPSVCPHIELIAGGQMSMIKGCCSSCFDSFVGDVVKSILDTRMSSQWLRLGL | 897 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo3g03930 | 897 | SUPERFAMILY | FYVE/PHD zinc finger | 481 | 554 | IPR011011 | - | |
Mepo3g03930 | 897 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 496 | 576 | IPR013083 | - | |
Mepo3g03930 | 897 | SMART | ring_2 | 419 | 460 | IPR001841 | - | |
Mepo3g03930 | 897 | MobiDBLite | consensus disorder prediction | 112 | 196 | - | - | |
Mepo3g03930 | 897 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Mepo3g03930 | 897 | ProSiteProfiles | Zinc finger PHD-type profile. | 506 | 555 | IPR019787 | - | |
Mepo3g03930 | 897 | SUPERFAMILY | RING/U-box | 418 | 467 | - | - | |
Mepo3g03930 | 897 | Coils | Coil | 115 | 176 | - | - | |
Mepo3g03930 | 897 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Mepo3g03930 | 897 | ProSitePatterns | Zinc finger RING-type signature. | 438 | 447 | IPR017907 | - | |
Mepo3g03930 | 897 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 414 | 480 | IPR013083 | - | |
Mepo3g03930 | 897 | SMART | PHD_3 | 508 | 553 | IPR001965 | - | |
Mepo3g03930 | 897 | MobiDBLite | consensus disorder prediction | 660 | 692 | - | - | |
Mepo3g03930 | 897 | CDD | RING-HC_Topors | 417 | 464 | - | - | |
Mepo3g03930 | 897 | MobiDBLite | consensus disorder prediction | 197 | 214 | - | - | |
Mepo3g03930 | 897 | MobiDBLite | consensus disorder prediction | 239 | 284 | - | - | |
Mepo3g03930 | 897 | PANTHER | F18C1.6 PROTEIN | 136 | 887 | - | - | |
Mepo3g03930 | 897 | MobiDBLite | consensus disorder prediction | 84 | 100 | - | - | |
Mepo3g03930 | 897 | ProSiteProfiles | Zinc finger RING-type profile. | 419 | 461 | IPR001841 | - | |
Mepo3g03930 | 897 | Pfam | PHD-finger | 509 | 554 | IPR019787 | - | |
Mepo3g03930 | 897 | Pfam | Ring finger domain | 418 | 461 | IPR001841 | - | |
Mepo3g03930 | 897 | MobiDBLite | consensus disorder prediction | 84 | 290 | - | - | |
Mepo3g03930 | 897 | MobiDBLite | consensus disorder prediction | 385 | 408 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo3g03930 | Mepo-Chr3 | 48753676 | 48757421 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo3g03930 | 419 | 464 | C3H Transcription Factor Family | AT2G39100 | 45.652 | 1.44e-08 | 55.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Mepo3g03930 | PHD | 2.1e-08 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo3g03930 | - | - | psat:127132436 | 1056.59 |