Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03930 ATGGTAAAGGGAAGAAAGTTTAGTAGCAAACGTGATTTGAGAAAGAGGGTTAGGTCAAAGGGGAGCGGGTCTGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCTGGGAATGTGTCTGATTGTCCAGAGGATGATTGTTTTTCTTTGGATGGATGTGCCGCTGAGGATAGTTTTGATGGGTTTATAGAAGACGGCGATTCGGAAAAGGAGGTGATTCAACGGGTGACGAAATTTAATAGATCAAGGGCTAAAACTGGTGTAAGGCGTCAGCGGACTAATGTAAGTAAAGCCTCAAGGAAGAGACAGAGGGTTACTTATTTAGAACAACCAGAAGAAGAAGAAGAACTAGATGAAGAAAATGGAGACGAAGAGGAAGAAGTAGAAGAAGAGGAGGAGGAGGAAGAAGAAGATGATGATGATTACAATGATGTTGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAGTGGAAGTGGAAGAGGAAGAGGAAGAAAAAGAAGAAGTGGAAGAGGTAGGTGGAAATGATGAGGATGATGAATTTAAACCAGAGGAAGAAGATTTCACAGATGAGGAGGAAGAAGAAACAAGGGGCAGAAAGAAGAAAAAGGATAATTCCATTTATGAAGACGAGGAATTTAAACCGGAGGACGAAGATTACACAGATGAGGAGGAAGAAGAAACAAGGCGCATTAAGAAGAAAAATAATGGCACGAAGATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCAACTTCTAGCAGAGGTCGAAAAAGGAGTGGTTCTAGAGTTTCAAAGAAGCCCAAGAGAAAGAGAAGACGAAAGAATGGAGGATCAAGGAGGAAAATACAGTGTGATGATGCAGATGATTTTTTGGATAATGTCCCAGCCATCAGAACAAATAGCAGAAAGAGATCAGTCCTGAAAAGGAGAAGGGTTATCCTTGAAGATGCCAATTCCGGCTCAGATTGCGAGTCTAGACCATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCCGTGGAGTTGTGTGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGGAAAATGAAGTGGTTGGACTATATGAAGATCTACATCAGCAATGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAAGGTAAGGAAAAAGTAGAGGACTTGAAGAGTGAGGTGGGAAAACAGGTGTGTGGAATTTGTCTGTCTGAGGAAAATAAAAGAAGAGTAAGGGGAGTACTAAACAGCTGCACTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGTCAAAGGTTGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCCAAACAATCAGTAAGCCTGCACGATCAACAACAGCGGAAGAGGCGGTGATACAAGTGCCCGAACGCGATCAGGTTTATCAGCCAACTGAAGAAGAACTCAGGAGCTACATTGATCCATATGAGTCAGTTATGTGTTCAGAGTGTCATCTAGGTGGAGACGATGGCCTCATGCTACTCTGTGATATATGTGATTCCCCTGCACACACTTATTGTGTTGGTTTGGGGAGAGAAGTACCTGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAATCTGATTTAAGAGCGGCAACTCAAAGCCTGCCTTCCCGGCCATCACCTGTTCATATACGAGAAAGTATAGACCTGAACCTGATGTCTTCACCTCATACATCTTTTAGTCAAGGGTTCGGGCATCATTCATCTTCTAGATTTTCTGGCAGAAGTATCGAAGGAGCTTCTCCAATGTCTGGAGGTGGGGCACCAACTTTATCAGAGAGACGGTGGATACACCGTCAAGTTCAGCAGCTACAAATTCAGCAGTTACGTTCAATTGATAGAATGGCTTCTACAACTGGCAGAACTAACGGTGTTTCAGCTACCGGTACAGTAAGTAACTTGAATAGCTCTGAAATTAATAGGGAACCAAGTTCTCAACATATAAGAACACAGGACGTAGGAACATCCTATCACACATTTTTTGAGGAGAGGTTAGGCAACAACATCTCTCCATTTATGCAGAATGGAGACCCCTTCTCCGTAAGAATGAGCAATTCAAGGGGCCCAGTGGTTCAGGATTCAACCATGTTTTCGAACGGGCCTGTGAGTGCAGCTATATGGCCTGGAATTTTGGGGACATCGACCTTATCAGATTATGGACCAATCCACCCATGCAGCAGCAGATCAAACATTGTCACTGAGGTTGGTATGCCTGCTACTGTCAAAGAAGAAGATAACTTGCACATTTTAAAGGAGCAATTGCAGTCAATGGTTAAAAGTCATTTGAAGAGATTGTCTCAAGATGCTGATTTGGGTTATAGTACTTTCAAGGACATTGCAAGGAGTTCTACGCATACCATACTTGCTGCTTGTGGACTCGAGCACAAGACGAGTGAGGTTTGTACTGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAATGAGTATGATTAAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGTATTTTGGACACAAGAATGTCTTCACAGTGGTTACGACTAGGACTTTAG 2694 0.431 MVKGRKFSSKRDLRKRVRSKGSGSDDSDEDYVVSDDAGNVSDCPEDDCFSLDGCAAEDSFDGFIEDGDSEKEVIQRVTKFNRSRAKTGVRRQRTNVSKASRKRQRVTYLEQPEEEEELDEENGDEEEEVEEEEEEEEEDDDDYNDVDEEEEEEEEEEEEEVEVEEEEEEKEEVEEVGGNDEDDEFKPEEEDFTDEEEEETRGRKKKKDNSIYEDEEFKPEDEDYTDEEEEETRRIKKKNNGTKMGKKKALKKRVSATSSRGRKRSGSRVSKKPKRKRRRKNGGSRRKIQCDDADDFLDNVPAIRTNSRKRSVLKRRRVILEDANSGSDCESRPSDYEFTISEEEKEQVREAVELCGNIRRNLRRASLRMENEVVGLYEDLHQQWKPPARKGKEKIEESQGRKGKEKVEDLKSEVGKQVCGICLSEENKRRVRGVLNSCTHYFCFACIMEWSKVESRCPLCKQRFQTISKPARSTTAEEAVIQVPERDQVYQPTEEELRSYIDPYESVMCSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQESDLRAATQSLPSRPSPVHIRESIDLNLMSSPHTSFSQGFGHHSSSRFSGRSIEGASPMSGGGAPTLSERRWIHRQVQQLQIQQLRSIDRMASTTGRTNGVSATGTVSNLNSSEINREPSSQHIRTQDVGTSYHTFFEERLGNNISPFMQNGDPFSVRMSNSRGPVVQDSTMFSNGPVSAAIWPGILGTSTLSDYGPIHPCSSRSNIVTEVGMPATVKEEDNLHILKEQLQSMVKSHLKRLSQDADLGYSTFKDIARSSTHTILAACGLEHKTSEVCTVPPPSVCPHIELIAGGQMSMIKGCCSSCFDSFVGDVVKSILDTRMSSQWLRLGL 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03930 897 SUPERFAMILY FYVE/PHD zinc finger 481 554 IPR011011 -
Mepo3g03930 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 576 IPR013083 -
Mepo3g03930 897 SMART ring_2 419 460 IPR001841 -
Mepo3g03930 897 MobiDBLite consensus disorder prediction 112 196 - -
Mepo3g03930 897 MobiDBLite consensus disorder prediction 1 17 - -
Mepo3g03930 897 ProSiteProfiles Zinc finger PHD-type profile. 506 555 IPR019787 -
Mepo3g03930 897 SUPERFAMILY RING/U-box 418 467 - -
Mepo3g03930 897 Coils Coil 115 176 - -
Mepo3g03930 897 MobiDBLite consensus disorder prediction 1 44 - -
Mepo3g03930 897 ProSitePatterns Zinc finger RING-type signature. 438 447 IPR017907 -
Mepo3g03930 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 480 IPR013083 -
Mepo3g03930 897 SMART PHD_3 508 553 IPR001965 -
Mepo3g03930 897 MobiDBLite consensus disorder prediction 660 692 - -
Mepo3g03930 897 CDD RING-HC_Topors 417 464 - -
Mepo3g03930 897 MobiDBLite consensus disorder prediction 197 214 - -
Mepo3g03930 897 MobiDBLite consensus disorder prediction 239 284 - -
Mepo3g03930 897 PANTHER F18C1.6 PROTEIN 136 887 - -
Mepo3g03930 897 MobiDBLite consensus disorder prediction 84 100 - -
Mepo3g03930 897 ProSiteProfiles Zinc finger RING-type profile. 419 461 IPR001841 -
Mepo3g03930 897 Pfam PHD-finger 509 554 IPR019787 -
Mepo3g03930 897 Pfam Ring finger domain 418 461 IPR001841 -
Mepo3g03930 897 MobiDBLite consensus disorder prediction 84 290 - -
Mepo3g03930 897 MobiDBLite consensus disorder prediction 385 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03930 Mepo-Chr3 48753676 48757421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03930 419 464 C3H Transcription Factor Family AT2G39100 45.652 1.44e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo3g03930 PHD 2.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03930 - - psat:127132436 1056.59