Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03878 ATGGATTACCGGTGGAGCAGCAGTAAGCATGATTCTGGTGGCCGGAGAAACCAATTCAAAAACGATCAGGCATATGATGTTGATGATGTTGAAGATTTTCGCTTGCCCAGAAATCAAAGACCAACTGAAAACGTTGATCTGGATAATGTTGAACAAGCTTCTCTCGACTCACACATAACGTCTTCTAATATTGGTTTTAAGCTTCTTCAAAAAATGGGTTGGAAAGGAAAGGGTCTTGGCAAACATGAACAAGGAATAGTTGAACCAATAAAATCTGGGATTAGAGATCCAAGACTAGGCGTCGGCAAGCAAGAAGAAGATGATTTTTTCACTGCAGAAGAAAATGTCCAGCGAAAAAAACTCGATATTGAGTTGGAGGAGACAGAGGAGAATGTGAGGAAGCGGGAGGTGTTAGCTGAACGTGAGCAAAAAATTCAGACCGAGGTGAAAGAAATTCGGAAGGTGTTCTTTTGTGAGCTCTGCAACAAGCAATACAAATTGGCAATGGAGTTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGGAAGCGTTTCAAAGAAATGAAGGAAATGCATGGCAGCAGTAGCCGGGATGATAGGCAAAAGCGAGAACAGCAGCGTCAAGAAAGAGAATTGGCTAAGTTTGCCCAAATTGCTGATGCTCAAAAGCAGCAACGGCTTCAACTGCAACAAGAGTCTGGATCAGCACCAGTTTCATTTTCCTCTGAATCTAAGACTGCTACTGCACTTACAGATCAGGAGCAGCGAAATACTTTGAAGTTTGGGTTTTCTGCTAAAGGCACTGTTTCCAAGAGCGCATTTGGTGTCAAGAAGCAAAATGTTCCGAAGAAGCAAAATCTCCCAGTGGCCTCTATATTTGGAAACGATAGTGATGAAGAGTGA 906 0.4249 MDYRWSSSKHDSGGRRNQFKNDQAYDVDDVEDFRLPRNQRPTENVDLDNVEQASLDSHITSSNIGFKLLQKMGWKGKGLGKHEQGIVEPIKSGIRDPRLGVGKQEEDDFFTAEENVQRKKLDIELEETEENVRKREVLAEREQKIQTEVKEIRKVFFCELCNKQYKLAMEFEAHLSSYDHNHRKRFKEMKEMHGSSSRDDRQKREQQRQERELAKFAQIADAQKQQRLQLQQESGSAPVSFSSESKTATALTDQEQRNTLKFGFSAKGTVSKSAFGVKKQNVPKKQNLPVASIFGNDSDEE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03878 301 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 6 301 - -
Mepo3g03878 301 MobiDBLite consensus disorder prediction 189 217 - -
Mepo3g03878 301 Pfam G-patch domain 62 102 IPR000467 GO:0003676
Mepo3g03878 301 MobiDBLite consensus disorder prediction 189 254 - -
Mepo3g03878 301 SMART G-patch_5 59 104 IPR000467 GO:0003676
Mepo3g03878 301 ProSiteProfiles G-patch domain profile. 61 106 IPR000467 GO:0003676
Mepo3g03878 301 MobiDBLite consensus disorder prediction 222 254 - -
Mepo3g03878 301 ProSitePatterns Zinc finger C2H2 type domain signature. 158 180 IPR013087 -
Mepo3g03878 301 Pfam Zinc-finger double-stranded RNA-binding 156 183 IPR022755 -
Mepo3g03878 301 MobiDBLite consensus disorder prediction 1 30 - -
Mepo3g03878 301 Coils Coil 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03878 Mepo-Chr3 48287823 48291195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03878 30 301 C2H2 Transcription Factor Family AT5G26610 67.033 9.62e-117 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03878 - - gmx:100785068 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03878 3 48287823 48291195 Mepo3g03878 3 48287823 48291195 ECH