Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03874 ATGAACGATTCTTGTGCCCCGGATCAATCTTTACCCAGAAACGATTTGTTTGAGCTGGTTTGGCAAAATGACCAGATTTTAGTGCATGGTCAATCTAGTAATTCCAATAGAGCTAAAATGACTCCAACTTCATCATCTCATATTCTTAAGGGTCATGATAAATATTCAGGACAACATGCTAATGAAACAAATACAAGGATAGGAAAGTTTGAGGATTTAGATAATGGTTTGAATGAAATTATTACAAGGCCTGTTTCTTCAAGTCAAGATGAAGATTTGATGACGATGATGCCTTGGTTCAATTGTGCAATGGATGATAAACACTCTTTACATCGTAGCTCTAGTTTCTTACATGAACTATCTGGTGCCACCACAAATGACTTTGCTGCCACAAATAAATTTTCTTTGCTTGATAGAAAAAGTAATTGTATTCAAGTATTCAGTGACTCTCATAAACAAGGGATCCTTTCCAAGGGTTCTTCACTTGCAGCTGAAGATTTTGATACCTCTGGACTAAAAACTAGCACCGATCAGTTAAATACGTCGTCGTTGTTGCATCAATGTCAACCCTCATTTGAATCAATTAGATTTAGAGAATCAGGTTTAGGTGAGAATAATACAGAAGGTAATGCAAACCAGCATGCACCTTCCGAAGAAATCTCTCATATTCCATCTTCCTCAACCGTAATGAATTTCACCCATTTTGCAAAACCTGCGGCTATTCTGAAAGCTAATCTTCAGAACATTGGTTTCTCTTCATCAAGATCAGAACGTGTGGGAGCAAAGAACAAAGATGCAGCTGCAATAGGAAGCAATCCTTGCGAATCATCAAAAGTTGCTTCACGTGGAGAATGTCCAAAAAGTTCAGCCATAAATTGTCATCAGTCAGTGGAGCCATCCAGGGTTGGTTTGAAACCTTTGGAGCCGAAATCTCTTGAGAAAAACACTACTGTTTCTACTCCTGCTTGCAAAGAAGATGTATCCAAAGTTGATCAAACTTCCAATCAAGTTCTTGGTGAGAGTGGCAGAAAAGGTCAAGAAGCTTTTAAAAAATGTACAGAGCTAACAGTAGTCTCTTCCTCTGTTTGCTCTGACAATGGCGCGTATAGAAGTTCAGGTGATGCAAATCAAAATTTGAAGCGAAAAAATCTGGACTCTGAGGATTCTGAGTGGCACAGTGAAGATTTTGAGGATGAATCAATTGGTGTTAAAAGAACTGATCATGGACGAGGCGTTATGGGCTCGAAGAAAAATCGTTCAGCCGAAGTGCACAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAGGATGCGTGCATTGCAAGAACTCATACCGAATTGCAACAAGGCGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAACTGCAAATTATGTCAATGGGAGGTGGTGGTTTATACATGCCTATGGCATTACCAGCAGGAATGCAGCACATGCATTCGGCTCACATGTTTCCCTTTTCACCCATGAGTGTTGCCATGCAAATGGGGTTGGGGGTGCCTCGATTTCAAGGAACTCATCATCCTGTTGCACATACATCTGGACTTGCTGCTTTACATGGGATGGCAAGACCAAATCCTCAAATGTTTGGGCTTCAAGCTGGTCCGGCACTGCACATGCCAATGCCATGTGCTTCAATGTTTTCTTATCCTGGAGAGCCTGTTATGAACTCATCAGCTGTAGAATTGAATGCTAGTGGAACAGCAGGACTTATGGAACCCATGGAGTCGGCTTCAGCCTTTAAGTTAAAGGATCCAATGCCAAATGGGAACTCACAAGTTATGCTTAACAACAAGGGATGTAGCTCAACAAATCAAATGTCGATCCAGTGTGAAGCAACAACCGGTGGACTTAAACAATCAAATTTGGTACTCGATAGTGCCCATGGTTTTCTGGAAAATGACAAAAGAGACAACGTTGAGATGGATAAATCTCATGAGTAA 1992 0.4076 MNDSCAPDQSLPRNDLFELVWQNDQILVHGQSSNSNRAKMTPTSSSHILKGHDKYSGQHANETNTRIGKFEDLDNGLNEIITRPVSSSQDEDLMTMMPWFNCAMDDKHSLHRSSSFLHELSGATTNDFAATNKFSLLDRKSNCIQVFSDSHKQGILSKGSSLAAEDFDTSGLKTSTDQLNTSSLLHQCQPSFESIRFRESGLGENNTEGNANQHAPSEEISHIPSSSTVMNFTHFAKPAAILKANLQNIGFSSSRSERVGAKNKDAAAIGSNPCESSKVASRGECPKSSAINCHQSVEPSRVGLKPLEPKSLEKNTTVSTPACKEDVSKVDQTSNQVLGESGRKGQEAFKKCTELTVVSSSVCSDNGAYRSSGDANQNLKRKNLDSEDSEWHSEDFEDESIGVKRTDHGRGVMGSKKNRSAEVHNLSERRRRDRINERMRALQELIPNCNKADKASMLDEAIEYLKTLQLQLQIMSMGGGGLYMPMALPAGMQHMHSAHMFPFSPMSVAMQMGLGVPRFQGTHHPVAHTSGLAALHGMARPNPQMFGLQAGPALHMPMPCASMFSYPGEPVMNSSAVELNASGTAGLMEPMESASAFKLKDPMPNGNSQVMLNNKGCSSTNQMSIQCEATTGGLKQSNLVLDSAHGFLENDKRDNVEMDKSHE 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03874 663 MobiDBLite consensus disorder prediction 30 59 - -
Mepo3g03874 663 PANTHER TRANSCRIPTION FACTOR PIF3 8 624 IPR044273 GO:0003700|GO:0006355
Mepo3g03874 663 MobiDBLite consensus disorder prediction 312 341 - -
Mepo3g03874 663 MobiDBLite consensus disorder prediction 30 51 - -
Mepo3g03874 663 MobiDBLite consensus disorder prediction 298 345 - -
Mepo3g03874 663 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 416 485 IPR036638 GO:0046983
Mepo3g03874 663 Gene3D - 413 476 IPR036638 GO:0046983
Mepo3g03874 663 MobiDBLite consensus disorder prediction 396 432 - -
Mepo3g03874 663 MobiDBLite consensus disorder prediction 366 432 - -
Mepo3g03874 663 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 419 468 IPR011598 GO:0046983
Mepo3g03874 663 SMART finulus 425 474 IPR011598 GO:0046983
Mepo3g03874 663 Pfam Helix-loop-helix DNA-binding domain 423 469 IPR011598 GO:0046983
Mepo3g03874 663 FunFam Basic helix-loop-helix transcription factor 414 477 - -
Mepo3g03874 663 CDD bHLH_AtPIF_like 419 480 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03874 Mepo-Chr3 48233111 48237708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03874 228 557 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 40.000 2.48e-45 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g03874 HLH 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03874 K12126 - gmx:100794974 590.497