Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03873 ATGGGAAGACATTCTTGTTGCTACAAGCAGAAGCTTCGTAAAGGTCTTTGGTCTCCAGAAGAAGATGAAAAGCTTTTGAATTATATCACCAAACATGGTCATGGATGTTGGAGCTCAGTTCCAAAATTAGCTGGTTTGCAAAGGTGTGGCAAGAGCTGTAGATTGAGGTGGATAAATTATCTAAGGCCTGATTTGAAGAGAGGAGCATTCTCAGAGCAAGAAGAGAATTCCATAATTGAACTTCATGCACTCCTAGGCAACAGGTGGTCGCAGATTGCAGCTCAGTTACCAGGAAGAACAGACAATGAGATAAAAAATCTATGGAATTCAAGTCTGAAGAAGAAGCTAAGGCAAAAAGGAATTGATCCAAACACACACCAACCATTCTCCGAGAACAATGACAATGACAAGCAATTACCTATGACTGACAATATTCCGATTCAAAAAACCTCTGTGGGATCCAATGAAGTGAAGAATCTATTTGATGATACACCAAATCCAAATTCTATACCTATGGATAATTGTAATTATCCCCTTGAAATTAATTCAAAAATAAACAACTCAGTTAATTGCTTCATACCTTGTGATAATATGGTTGGATTAGGAGGATCATATCTCAATTTTCAACAACTTAACTATGGAATCAATAACATGACTCTATCTACAAATTCCAACAACAACAGTTCACTTTGCTTCATACCAAGTACGAGTGGTTCAACTTCTACTTGCTCTCAAATGATGTCAGAATTCAATTCTTCCACCATGTACCATTCTATGTTCCAAACTCCAAACACAAATCATCCTTCAAATTCTATATCCTCTGGTGAAGTTGATGGGATTCAAAACTGGGAATTTGGTGCAAGCAAAAGCAGCAATGGAAGCAGCAGTAGCAACATTAATTACCTTGATCATCAAGTAGTAGAAGACATTAAATGGTCTGATTATTTAAACTCTACTCCATTTTTTCTTGGAAACAACCTCACATTTCAGCAGCAGAATCATCAAACACACTCTTCTATCTACAGTGATAGTAATGAGGTTAAACAAGAAATGGGGTTCATCAATACAAATGAATCTATTCAATCAAGTAGTAGCACATGGCTTCCTCATTTTGAAGCTGCTAATTCAGATATATATAGCAACAAAGATCTTCAAAGATTTTCACTGGCTTTTGGACAAACACTTAATTAG 1191 0.3644 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSEQEENSIIELHALLGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKLRQKGIDPNTHQPFSENNDNDKQLPMTDNIPIQKTSVGSNEVKNLFDDTPNPNSIPMDNCNYPLEINSKINNSVNCFIPCDNMVGLGGSYLNFQQLNYGINNMTLSTNSNNNSSLCFIPSTSGSTSTCSQMMSEFNSSTMYHSMFQTPNTNHPSNSISSGEVDGIQNWEFGASKSSNGSSSSNINYLDHQVVEDIKWSDYLNSTPFFLGNNLTFQQQNHQTHSSIYSDSNEVKQEMGFINTNESIQSSSSTWLPHFEAANSDIYSNKDLQRFSLAFGQTLN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03873 396 CDD SANT 69 112 IPR001005 -
Mepo3g03873 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mepo3g03873 396 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mepo3g03873 396 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Mepo3g03873 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mepo3g03873 396 FunFam MYB transcription factor 68 129 - -
Mepo3g03873 396 MobiDBLite consensus disorder prediction 119 139 - -
Mepo3g03873 396 CDD SANT 17 61 IPR001005 -
Mepo3g03873 396 Gene3D - 11 67 - -
Mepo3g03873 396 SMART sant 66 114 IPR001005 -
Mepo3g03873 396 SMART sant 13 63 IPR001005 -
Mepo3g03873 396 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo3g03873 396 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Mepo3g03873 396 Gene3D - 68 142 - -
Mepo3g03873 396 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo3g03873 396 PANTHER MYB DOMAIN PROTEIN 55 1 329 - -
Mepo3g03873 396 MobiDBLite consensus disorder prediction 123 139 - -
Mepo3g03873 396 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03873 Mepo-Chr3 48214249 48215910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03873 1 395 MYB Transcription Factor Family AT1G09540 45.498 5.63e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo3g03873 Myb_DNA-binding 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03873 K09422 - gmx:778182 406.371