Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03867 ATGGCTTCCATAACCGCAATCGGTGCTTCCACCGCATGCAAACTTCCCTCTCTCGAACTCTACAAAAAACACAAACTAACTTCCATTTCGACTTCCTCCGTTAAATTTCACTTTTCCGACGGTAACAAATCCCGCCACATCAACCGTCTCGCCAATTTCAACTCCTCCGATAGGTTTCTTCCTTCAGCCGTCGCTACTCCTAATTCCTCCTCTTCTTCGCTTCTCAGTGATGAAGCATTCAAAGGATTAGGCTCTGGCTTCGACGGAGAATCTGAAGACGAAGATTTTCCTTCACGAACTACTTCTATTAACGCTGATGAACTTGACATTTCTAAACTCGATTTGCCTTCGCAGCTTGTTGATTCGCTACGTGACCGTGGGATTACTCAACTTTTTCCTATTCAGAGAGCTGTGTTAGTACCTGCACTAGAAGGCAGAGATATTATTGCTCGTGCAAAGACTGGAACAGGGAAAACATTGGCTTTTGGAATTCCTATTATCAATGGTTTAGACGATGGTCAAGATTCTGGTCCTTACAGTCGCAGGCGTCTTCCTAGAGCTTTGGTACTTGCACCTACCAGGGAGTTAGCAAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCACCTTATCTCAAAACTGTTTGTATATATGGAGGCGTTTCTTATGTTACTCAACAGAGTGCACTTTCGCGTGGTGTTGATGTGGTTGTTGGAACGCCTGGTAGGCTGATTGACCTCATCAATGGGAACACACTTAAGTTGAGTGAAGTTGAGTATTTGGTACTCGACGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAAGAGGATGTAGAAGTCATTTTGGAAAAGCTTCCAGCAAAGAGACAGAGCATGCTTTTTTCTGCAACCATGCCTAGTTGGGTGAAGAAATTGGCCAGGAAATACTTGAACAATCCATTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTATATGCTATATCGGCCACTTCCACTTCAAAGCGAACCATTCTTTCTGATCTTATTACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACGCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATCACTTCTGAAGCACTGCATGGTGATATATCTCAGCACCAGAGAGAAAGAACATTGAACGGTTTCAGACAAGGAAAATTTACAGTGCTTGTTGCAACTGATGTTGCATCTCGTGGACTTGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCCGAGACTTTTGTACATCGCTCTGGCCGTACTGGCCGTGCAGGAAAACTAGGTACTGCCATTCTGATGTTCACAGGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGTTGTAAATTTGAATTTGTTAACGCGCCGTCTGTGGAAGATGTTTTGGAGTCATCTGCGGAGCAAGTTGTTGTCACACTTAATGGAGTTCATCCAGAGTCTATTGCATTTTTCATCCCAACTGCACAGAAACTGATTGAAGAAAAAGGAACAACTGCCCTTGCAGCTGCACTGGCACAGATGAGTGGATTCTCCCAACCTCCGTCTTCCCGGTCTCTTATCACCCATGAACAGGGATGGGTTACATTGCAATTAACTCGAGATTCAGAAAATTCTCAAAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTATATTCCAAAGCTGCTGACGAAGTTGGAAAAGTCCATTTAATTGCGGATGAAAGGGTTCAAGGAGCCGTTTTTGATCTTCCAGAGGACATTGCTAAAGAGTTGCTTGAGAAGGACATACCAGCTGGAAACACTATTTCCAAAGTCACCAAGTTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTTTCCGATAGAGAACGAAATAACCGAAGAGGAGGTTCTAGGGATGGGAGAGGTTTTAGATCCTCGCGGGGATGGGATGGAGGCCGAGGCTCTGATGATGATTTTGGTGACTCGTCTAGGAGGGGTGGCAGAAGTTATAAATCTGGCAACAGCTGGTCCAAACCAGAAAGAAGCAGTCGGGATGATTGGCAAATTGGAGGCAGACAATCGAGCAGATCTTCTTCATCACCGAACAGAAGCTTTGCAGGGACCTGTTTTACTTGTGGGGAATCTGGGCATCGAGCGTCGGACTGTCCAAACAAGCGAGGCGACTTTTTTTAA 2262 0.4403 MASITAIGASTACKLPSLELYKKHKLTSISTSSVKFHFSDGNKSRHINRLANFNSSDRFLPSAVATPNSSSSSLLSDEAFKGLGSGFDGESEDEDFPSRTTSINADELDISKLDLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIINGLDDGQDSGPYSRRRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCIYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMFTGSQRRTVRSLERDVGCKFEFVNAPSVEDVLESSAEQVVVTLNGVHPESIAFFIPTAQKLIEEKGTTALAAALAQMSGFSQPPSSRSLITHEQGWVTLQLTRDSENSQRYFSARSVTGFLSDVYSKAADEVGKVHLIADERVQGAVFDLPEDIAKELLEKDIPAGNTISKVTKLPPLQDDGPPSDFYGKFSDRERNNRRGGSRDGRGFRSSRGWDGGRGSDDDFGDSSRRGGRSYKSGNSWSKPERSSRDDWQIGGRQSSRSSSSPNRSFAGTCFTCGESGHRASDCPNKRGDFF 753
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03867 753 FunFam Nucleolar RNA helicase II 337 527 - -
Mepo3g03867 753 SMART c2hcfinal6 731 747 IPR001878 GO:0003676|GO:0008270
Mepo3g03867 753 Gene3D - 109 319 IPR027417 -
Mepo3g03867 753 Pfam Zinc knuckle 730 747 IPR001878 GO:0003676|GO:0008270
Mepo3g03867 753 CDD GUCT_Hera 543 623 - -
Mepo3g03867 753 Pfam GUCT (NUC152) domain 536 636 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mepo3g03867 753 SMART helicmild6 369 449 IPR001650 -
Mepo3g03867 753 Gene3D - 721 751 - -
Mepo3g03867 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 470 IPR027417 -
Mepo3g03867 753 MobiDBLite consensus disorder prediction 644 688 - -
Mepo3g03867 753 CDD DEADc 119 316 - -
Mepo3g03867 753 Pfam DEAD/DEAH box helicase 132 304 IPR011545 GO:0003676|GO:0005524
Mepo3g03867 753 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 106 683 - -
Mepo3g03867 753 SUPERFAMILY Retrovirus zinc finger-like domains 712 750 IPR036875 GO:0003676|GO:0008270
Mepo3g03867 753 FunFam ATP-dependent RNA helicase RhlE 100 318 - -
Mepo3g03867 753 CDD SF2_C_DEAD 329 458 - -
Mepo3g03867 753 MobiDBLite consensus disorder prediction 711 732 - -
Mepo3g03867 753 Gene3D - 330 531 IPR027417 -
Mepo3g03867 753 SMART ultradead3 127 332 IPR014001 -
Mepo3g03867 753 ProSiteProfiles Zinc finger CCHC-type profile. 732 747 IPR001878 GO:0003676|GO:0008270
Mepo3g03867 753 Pfam Helicase conserved C-terminal domain 341 449 IPR001650 -
Mepo3g03867 753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 504 IPR001650 -
Mepo3g03867 753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 315 IPR014001 -
Mepo3g03867 753 MobiDBLite consensus disorder prediction 627 753 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mepo3g03867 Mepo-Chr3 48140537 48146548 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03867 89 471 Eukaryotic Initiation Factors Gene Family AT1G72730 35.990 8.23e-65 219
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03867 - - gmx:100779706 1025.39