Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03860 ATGGTCACTACAGAACTCAGAGTAGAATCTGCTGTTTGGCAGCAAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGTGGTGCATGTGGGTATGGAAATCTGTACACAGATGGATATGGTATAAAATCAGCAGCATTGAGTACTGCTTTGTTTAATGATGGGAAGTCATGTGGTGGTTGCTATCAGATAGTTTGTGATGCAAGGCAAGTTCCTCAATGGTGTCTCAGAGGCACTTCCATCACTATTACTGCCACAAATTTTTGTCCACCAAACTTTGCACTCCCTAATGACAATGGTGGTTGGTGTAATCCCCCTAGACCTCACTTTGACATGTCTCAACCTGCCTTTCAGACAATTGCCAAGTACAGAGCTGGAATTGTTCCCATTTTGTATAGGAGAGTTGGGTGCAAAAGAAGTGGAAACATAAGATTTACTATAAATGGGAGAGACTATTTTGAGTTGGTGCTTATAAGCAACGTTGGTGGAGGTGGAGAGATATCTAAAGTTTGGATAAAAGGATCAAAAAAGAATAAATGGGAACCGATGTCAATGAATTGGGGTGCTAACTGGCAGAGCCTAAGCTATCTCAATGGTCAAAGCTTATCATTTAGAATTCAACTAAAAAATGGAAAGACTCGTACAGCTATTAATGTTGCACCTTCCAACTGGAGATTTGGCCAGTCTTACAAAAGTAACGTTCAGTTCTGA 723 0.4122 MVTTELRVESAVWQQAHATFYGGSDASGTMGGACGYGNLYTDGYGIKSAALSTALFNDGKSCGGCYQIVCDARQVPQWCLRGTSITITATNFCPPNFALPNDNGGWCNPPRPHFDMSQPAFQTIAKYRAGIVPILYRRVGCKRSGNIRFTINGRDYFELVLISNVGGGGEISKVWIKGSKKNKWEPMSMNWGANWQSLSYLNGQSLSFRIQLKNGKTRTAINVAPSNWRFGQSYKSNVQF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03860 240 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Mepo3g03860 240 PRINTS Expansin/Lol pI family signature 30 48 IPR007118 GO:0005576
Mepo3g03860 240 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Mepo3g03860 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Mepo3g03860 240 PRINTS Expansin/Lol pI family signature 12 27 IPR007118 GO:0005576
Mepo3g03860 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Mepo3g03860 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 146 IPR007112 -
Mepo3g03860 240 SMART dpbb_1 48 136 IPR007112 -
Mepo3g03860 240 Pfam Expansin C-terminal domain 147 225 IPR007117 -
Mepo3g03860 240 PRINTS Expansin signature 104 121 IPR002963 GO:0009664
Mepo3g03860 240 PRINTS Expansin signature 43 57 IPR002963 GO:0009664
Mepo3g03860 240 PRINTS Expansin signature 145 157 IPR002963 GO:0009664
Mepo3g03860 240 PRINTS Expansin signature 85 95 IPR002963 GO:0009664
Mepo3g03860 240 PRINTS Expansin signature 121 134 IPR002963 GO:0009664
Mepo3g03860 240 PRINTS Expansin signature 157 178 IPR002963 GO:0009664
Mepo3g03860 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664
Mepo3g03860 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Mepo3g03860 240 PRINTS Expansin signature 72 83 IPR002963 GO:0009664
Mepo3g03860 240 FunFam Expansin 146 240 - -
Mepo3g03860 240 Pfam Lytic transglycolase 49 136 IPR009009 -
Mepo3g03860 240 SUPERFAMILY Barwin-like endoglucanases 10 164 IPR036908 -
Mepo3g03860 240 SUPERFAMILY PHL pollen allergen 143 236 IPR036749 -
Mepo3g03860 240 Gene3D - 3 142 IPR036908 -
Mepo3g03860 240 PANTHER EXPANSIN-A15 9 236 IPR002963 GO:0009664
Mepo3g03860 240 CDD DPBB_EXPA_N 13 141 - -
Mepo3g03860 240 Gene3D - 143 240 IPR036749 -
Mepo3g03860 240 FunFam Expansin 2 142 - -
Mepo3g03860 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 236 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03860 Mepo-Chr3 48069074 48070089 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03860 1 240 Expansin Gene Family AT4G01630 79.167 4.73e-147 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03860 - - psat:127132523 486.878