Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03853 ATGTTTGATTCTAGCAACTCAGAGATGACAAAAAGCAATGGCATAGGTTCCTCTCACAGTGATTTTCATTCCTCCCAAAGCAAGAATAGTACTCACATGTTCACATATTTAACTCCTCTCAAAAAACCAAGAGTAGATTCAAACCAAACTGCAACAACAAACTCACAGAAACAGTACTTGATGGGGTGTGAATATAAAAAAAATGGAAAAGTGAACTTCTCAAACTTTTCTATACCTGCAGTGTTTCTCAAATCAACTCATCAACAAAATAGTTCAAGAAATGTATTATTTTCACAAAGAGAACAAGAGAAAGAAACGTTAAATGCTGCTACCAAATCAAACTCTGCATATGAAAGAAGTAGAGAATTACTACCAACCGTTGATGAACATTCTGAAGCTGCTGCTAGCCATACCAATGCACCTAGAATTAGAGGAAAGAGAAAAGCTAGTGCTATTAACTTATGTAATGCACGAAAACCATCTTCTGTATGTTCACTTGAAGCCTCAAATGATCTAAACTTTGGTTGCAGAAAATCATATGAGGACACTGATGACTCTCCATATTTAAGTGATAATGATGAAGAAACACAAGAAAATACGGTGAAAGAAAAGCCAGTTCGAGAAGGAAACAGAGTCAAGAGAAGCTACAGGAATGCAAAAGTTCATAATTTATCTGAAAGGAAGAGAAGAGATAAAATTAATGAGAAAATACGCGCATTGAAAGAACTCATACCAAATTGCAATAAGATGGACAAAGCTTCAATGCTTGACGATGCAATCGATTATCTTAAGACCCTCAAGCTTCAGTTACAGATTATGTCAATGGGAAGAGCACTTTGTATGCCAGTTAATCATCTTATGATGTTACCCGTACATCATATGAACATGAACATGAATATGAATGCACAACATTTGATGGGTTTCAGGCCACACGTACAGTTTCCTATTCCACAAATGGGTGATGGTGTCACAAACAATAACAACGACAGAGTTCAGATGTTTGGTTTCTCCAACCAATTATCACCACACATGTCAACTCCCAATGCACCTTTCATTCCTCCTATCATTGGAAACTCTTCAACCACACCAACACCAACCACTTTTGGCAACCAGAATCAACCTGGAAGGACATGTGGCTAG 1140 0.3719 MFDSSNSEMTKSNGIGSSHSDFHSSQSKNSTHMFTYLTPLKKPRVDSNQTATTNSQKQYLMGCEYKKNGKVNFSNFSIPAVFLKSTHQQNSSRNVLFSQREQEKETLNAATKSNSAYERSRELLPTVDEHSEAAASHTNAPRIRGKRKASAINLCNARKPSSVCSLEASNDLNFGCRKSYEDTDDSPYLSDNDEETQENTVKEKPVREGNRVKRSYRNAKVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIMSMGRALCMPVNHLMMLPVHHMNMNMNMNAQHLMGFRPHVQFPIPQMGDGVTNNNNDRVQMFGFSNQLSPHMSTPNAPFIPPIIGNSSTTPTPTTFGNQNQPGRTCG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03853 379 CDD bHLH_AtPIF_like 217 276 IPR047265 -
Mepo3g03853 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983
Mepo3g03853 379 PANTHER TRANSCRIPTION FACTOR PIF3 17 362 IPR044273 GO:0003700|GO:0006355
Mepo3g03853 379 MobiDBLite consensus disorder prediction 181 209 - -
Mepo3g03853 379 MobiDBLite consensus disorder prediction 360 379 - -
Mepo3g03853 379 Gene3D - 213 275 IPR036638 GO:0046983
Mepo3g03853 379 FunFam Basic helix-loop-helix transcription factor 212 275 - -
Mepo3g03853 379 MobiDBLite consensus disorder prediction 99 118 - -
Mepo3g03853 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 221 296 IPR036638 GO:0046983
Mepo3g03853 379 MobiDBLite consensus disorder prediction 195 209 - -
Mepo3g03853 379 MobiDBLite consensus disorder prediction 1 28 - -
Mepo3g03853 379 Pfam Helix-loop-helix DNA-binding domain 221 266 IPR011598 GO:0046983
Mepo3g03853 379 SMART finulus 223 272 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03853 Mepo-Chr3 48004415 48006763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03853 71 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 38.723 1.65e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g03853 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03853 K12126 - gmx:100784724 237.654