Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03852 ATGGGAAAAACAAATAGTTCAAATTCCTCTTCATCTATTAGCAGTAACAGCAACCATAATCTTTTTATTTCAACTGCATCCTCTCTTACACATCTCAACACTCAACAACTTCCCACTGATCTTAGTCTTGGACTCACCATTTCCCCCACTCAACATTTTCATGTTGGCTCCTCAGTTTCAAGGGGGCAATGGCAACAAAACTATGACTACAATAGCTTGTATGTGAAGGTGTACATGGAAGGAATTCCAATTGGTAGAAAACTTAATATACTTGCTCATCAAAGTTACCATGAGTTAGTTAAGACTCTTGAACACATGTTTGACACTACCATTCTATGGGGAAATGAGATGGATGGAGTGCAACCAGAAAGATGTCACGTGTTAACTTATGAAGATGAAGAAGGAGATTTAGTCATGGTTGGAGATGTTCCTTGGGAGATGTTTTTATCGACTGTTAAGAGGTTGAAGATCACAACGGTAGACACATTTGGGTGTTAA 498 0.3855 MGKTNSSNSSSSISSNSNHNLFISTASSLTHLNTQQLPTDLSLGLTISPTQHFHVGSSVSRGQWQQNYDYNSLYVKVYMEGIPIGRKLNILAHQSYHELVKTLEHMFDTTILWGNEMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITTVDTFGC 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03852 165 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 159 IPR003311 GO:0005634|GO:0006355
Mepo3g03852 165 Pfam AUX/IAA family 69 157 IPR033389 -
Mepo3g03852 165 Gene3D - 66 164 - -
Mepo3g03852 165 SUPERFAMILY CAD & PB1 domains 67 158 - -
Mepo3g03852 165 ProSiteProfiles PB1 domain profile. 72 162 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03852 Mepo-Chr3 47988829 47989786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03852 75 161 B3 DNA Binding Superfamily AT2G46530 36.364 1.94e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mepo3g03852 AUX_IAA 6.9e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03852 K14484 - gmx:100783140 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03852 3 47988829 47989786 Mepo4g03555 4 44969781 44971263 PCT