Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03844 ATGACTCCAATCGTCATTGTGATCGCCGTCAACCTTTCCTCCCTTGCATTACTTATTCTTATCTGTTGTATCAAACTCCGCTACCAAGTCTCATCCATTCCAACTCCAACACCGAAAATACAGAAACTCATCGACACGCTTCCAACATTCCATTTCCCATCAGTTACTACCGCCAACAACTTAGTGCTCGTTTGCCTCTCGGAATTCAAACACTTGGGTCTTCTCCACCTTCTCCCACGGTGTCGTCACGGATTTCATGTCGAATGTATAGATCACTGGTTGATTCAGTCGTCTACATGTCCCTTGTGTAGGACGCACATTCTTCTTTCTCAGTCTGAGCTCGAAGTAATTCTACATTTCAACAGTCTTCAACTTCAGTTTGAACTCGGTAACGTCTGGCGAGGAGGATATGATGTTGTCTCTGATGGAAGATCTATTTCCACAGGTGCGGAGGTTGATCATGATTTTGTTGTCTCCAACGGAAGATCTATTTCCACGATTTGCGTCATCCCGCAGCGACGATATTGA 528 0.4489 MTPIVIVIAVNLSSLALLILICCIKLRYQVSSIPTPTPKIQKLIDTLPTFHFPSVTTANNLVLVCLSEFKHLGLLHLLPRCRHGFHVECIDHWLIQSSTCPLCRTHILLSQSELEVILHFNSLQLQFELGNVWRGGYDVVSDGRSISTGAEVDHDFVVSNGRSISTICVIPQRRY 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03844 175 Pfam Ring finger domain 64 104 IPR001841 -
Mepo3g03844 175 SUPERFAMILY RING/U-box 63 110 - -
Mepo3g03844 175 ProSiteProfiles Zinc finger RING-type profile. 64 104 IPR001841 -
Mepo3g03844 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 108 IPR013083 -
Mepo3g03844 175 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 40 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03844 Mepo-Chr3 47919107 47919634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03844 41 108 C3H Transcription Factor Family AT2G18650 53.521 4.81e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03844 - K10663 gmx:100776516 95.1301