LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g03841	ATGGAAAAAACCGAACCCTTTCTTCTAATTAACCGTCAAAATTTACAACCTTTCACTTCTTCCAAATCCTTCAACGACATAGCCACCCTACAACAACAACCACCACCACCATCACCACCACAATCATCTGAGATACAATCCATCAACTTCACTCCACAACAACAACACCACCAACCATTTTCTCATCACAAACAAAAAAAACTCAGTCGCTGCAAAACAGCACCAGCCATGTTCATTCTCCCACACCTTAAACCCAACAATGACCAACCCCAACTTCCCAAACCTCAAACCAATTCCATCATTCGACAAGGCATTTGGCTTCTCCTTATATACCTCTCTATTGGTGTCATAATATACTCTTTCAACACAAAAAATTTCTCTGGCATTGAAACTCACCCTGTTGTTGATGCTCTTTATTTTTGTATAGTCACCATGTGTACAATTGGTTATGGAGACATAGCTCCTTTAACACCAATGACTAAACTCTTTGCTTGTGTTTTTGTTTTAGTGGGTTTTGGATTCATAGATATACTTTTAAGTGGTCTTGTTAATTTTGTTTTGGATTTGCAAGAGAATACGATTTTAACCGGGCTTCAAATGGGTGCTAGAGAAGGGTTTTCAGCCAGGGATTATATAGTTGATGTTGCAAAAGGTAGGATGAGAATTAGGTTGAAGGTTGGTTTAGCACTTGGTGTTGTGGTTTTGTGTATTGGTGTTGGGAGTTTGGTTTTGTGTTTTGTTGAGGGTTTGGATTGGGTTGATTCTATTTATTTGGCTGTTATGTCTGTTACAACGGTTGGTTATGGTGATAGAGCTTTTAAGACTCTTCCGGGGCGATTGTTTGCGGCAATTTGGTTGTTGTTTTCTACTTTGATGGTTGCTAGGGCTTTTCTTTATTTAGCTGAAGCTAGAATTGATAGAAGACATAGGAGATTGGCTAAGAAGGTTTTGCATAGAGAAATTACTATTGAAGATTGGCTTGCTGCTGATATCAACAATACTGGTTTTATTAGTAAGTCAGAATATGTGATTTTCAAGCTGAAAGAGATGGGTAAAATACAAGACAAAGATGTAATGCAAATTTGTGATCAGTTCAGGAAGCTTGATCCCTCTAACTGTGGGAAGATAACATTACCTCATCTCTTGGAGGGTAGGTCATGA	1161	0.3842	MEKTEPFLLINRQNLQPFTSSKSFNDIATLQQQPPPPSPPQSSEIQSINFTPQQQHHQPFSHHKQKKLSRCKTAPAMFILPHLKPNNDQPQLPKPQTNSIIRQGIWLLLIYLSIGVIIYSFNTKNFSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPMTKLFACVFVLVGFGFIDILLSGLVNFVLDLQENTILTGLQMGAREGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGVGSLVLCFVEGLDWVDSIYLAVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRLAKKVLHREITIEDWLAADINNTGFISKSEYVIFKLKEMGKIQDKDVMQICDQFRKLDPSNCGKITLPHLLEGRS	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g03841	386	Pfam	Ion channel	233	302	IPR013099	-
	Mepo3g03841	386	Pfam	Ion channel	107	186	IPR013099	-
	Mepo3g03841	386	FunFam	Two-pore potassium channel 3	209	323	-	-
	Mepo3g03841	386	SUPERFAMILY	EF-hand	326	381	IPR011992	-
	Mepo3g03841	386	SUPERFAMILY	Voltage-gated potassium channels	100	186	-	-
	Mepo3g03841	386	ProSitePatterns	EF-hand calcium-binding domain.	330	342	IPR018247	-
	Mepo3g03841	386	Gene3D	-	91	197	-	-
	Mepo3g03841	386	Gene3D	-	210	329	-	-
	Mepo3g03841	386	PRINTS	Two pore domain K+ channel signature	143	171	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Mepo3g03841	386	PRINTS	Two pore domain K+ channel signature	264	273	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Mepo3g03841	386	MobiDBLite	consensus disorder prediction	21	45	-	-
	Mepo3g03841	386	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	135	360	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Mepo3g03841	386	SUPERFAMILY	Voltage-gated potassium channels	216	324	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g03841	Mepo-Chr3	47893977	47896500	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g03841	64	382	Ion Channels	AT4G01840	68.000	3.15e-155	441

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g03841	K05389		-	gmx:100801488	559.681