Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03828 ATGGAAGCTTTTCAATTGTACGGTAATGGTGGTGGTTCATCTGATTTAAGGGCTATGGGAAAAAAATCAAAAGAATGGGATTTGAATAATTGGAAATGGGATAGTCATCTTTTCATAGCTACTAGTAAGTTGACTCCGGTGCCGGAACACCGCCAATTTTTGCCTATTCCGGTTGGTGGTGGTGGTGGTTGTTCTAACTCAAATAGTTCATCATCTTGCTCAGAACAGTTAGATCTTGGGATTTGTCAAGTGAAGGAAGGTGAGAGGAAAAGGAGGGTTATTGTTGTGGAAGATGAACTAGGTTTAGGTTCGAATAAGGAGGGTGGTAATCTTAGTTTAAACCTTGGTGGTGGTGGTGGTGGTGTTGCTACATGGGAAGGAAATAATGGGAAGAAGAGTAGAGTAGCTGGTGGAGGTAGTTCTAGTAGAGCATTTTGTCAGGTGGATGATTGTCGTGCAGATCTTAACAACGCGAAAGATTATCACCGACGTCATAAAGTTTGTGAGATACATTCAAAGGCTAGTAAGGCCCTTGTCGGAAATGCGATGCAGCGGTTCTGCCAACAATGTAGCAGGTTTCACTTGCTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCAGGCCATAATAAAAGGAGGAGAAAAACAAATCAAGATGCTGTTCCTAATGGAAGTTCACCGAACGATGATCAGACTAGTAGTTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCAGCCTGACAGGTCAAATCAGACTGCCGATCAGGATCTGCTTACTCATCTTTTAAGGAGTCTTGCTAATCAGAATGGCGAACAAGGGGGAAGAAACTTGTCAAACCTTTTACGGGAACCTGAGAATCTGTTAAAAGAAGGGTCTTTATCTGGGAAGTCTGAGATGGTTTCTACTTTAGTTACCAATGGTTCTCAAGGTTCTCCAACTGTTACAGTACAGAATCAAACAGTTTCTATTAGTGAAATTCAGCATCAAGTGATGCATTCACATGATGCTAGGGTTGCTGATCAACAAACCACATTTTCTGCAAAGCCCGGTGTTTCAAACAGCCCTCCAGCTTACTCAGAAGCCAGAGATAGTACTGCTGGACAGACCAAGATGAATGATTTTGATCTGAATGACATCTATATTGACTCAGACGATGGCATAGAGGACATAGAAAGGTTGCCTGTCACTACAAATCTTGGTGCTAACTCTCTTGATTACCCATGGATACAACATGATTCACATCAGTCGAGTCCACCTCAAACAAGTGGAAACTCAGATTCTGCATCTGCCCAGTCTCCTTCTAGTTCCACTGGAGAGGCTCAGAATCGCACGGATCGGATTGTTTTTAAACTATTCGGTAAAGGACCGAGCGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGATTGGTTATCCCACAGTCCAACTGATATTGAAGGATATATACGGCCTGGTTGTGTTGTTTTGACTATTTATCTGCGTCAGGCTGAGGTTGTGTGGGAGGAGCTTTGCTTTGATCTGACTTCCAGTTTGAATAGGCTTCTGGATGTCTCAGATGATGATTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCCTTCATTTTCAATGGCCAGATTGTCATCGATACACCCCTTCCTTTCAGGAGTAATAATTATGGTAAGATTTTGAGTGTTAGTCCAATTGCTGTACCAGCATCAAAGACAGCTCAATTTTCTGTGAAGGGTATCAACCTGACTTGCCCTGCCACAAGGTTATTGTGTGCTTTAGAAGGGAATTATTTGGACTGTGAAGATACTCATGAGCCTATGGATCAATGCTCCAAGGATCTTGATGAGCTTCAGTGCATCCAATTTTCATGTTCTGTCCCTGCGATGAATGGACGAGGGTTTATTGAGATTGAGGACCAGGGTTTGAGCAGCAGTTTTTTTCCTTTCATAGTTGTGGAGGAGGACGTTTGCTCTGAAATCTGTGTGCTTGAGCCTTTACTGGAATCAAGTGATACTTATCCAGATGTTGAAGGAGCTGGAAAAATTCAAGCAAAAAATCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTCCACAGAAGGCAAATAAAATCTAGGGTGGTTTGTTTGAATTCTAGTACGGATCTGTTTCCATTAGATCGATTCAAGTGGCTCATGGAGTTCTCTGTGGACCATGATTGGTGTGCAGTAGTTAAAAAGCTATTGAACCTCATGCTTGATGGAACAGTGAGTACAGGAGATCACACATCCCTGTATCTTGCACTTTCAGAGTTGGGTCTCCTTCACAGAGCTGTGAGGAGAAATAGCAGGCAGTTGGTGGAGCTTCTTTTGAGATTTGTTCCTCAAAATATTTCAGATAAACTAGGATCTGAAGACACGGCGCTGGTTAATGGAGAGAATCAAAACTTCTTGTTTAGACCTGATGCTGTCGGTCCTGCTGGTTTGACAGCACTCCATATAGCAGCCGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTGACTAATGATCCTTGCATGGTTGGAATTGAAGCATGGAATAGTGCTCGCGACAGCACGGGGTCAACACCTGAGGATTATGCACGGTTACGTGGTCATTATACTTACATTCATTTGGTGCAAAAGAAAATCAACAAGAGCCAAGGAGGGGCTCACGTGGTGGTGGATATTCCTAGCATTCCGACAAAGTTCGACACAAGCCAGAAGAAAGATGAATTGTGCACTACCTTTGAGATTGGAAATGCTGAAGTTAAAAAGGTACGAAAGGACTGCAAACTTTGTGATCATAAGCTGTCGTGTAGAACTGCTGTACGAAAGTCTTTCGTATACAGACCTGCAATGCTGTCAATGGTGGCTATAGCAGCGGTCTGTGTCTGTGTGGCTCTTCTATTCAAAAGCTCGCCGGAAGTTCTGTATATATTCCGACCTTTCAGGTGGGAATCTTTGGATTATGGAACAAGCTGA 3012 0.4283 MEAFQLYGNGGGSSDLRAMGKKSKEWDLNNWKWDSHLFIATSKLTPVPEHRQFLPIPVGGGGGCSNSNSSSSCSEQLDLGICQVKEGERKRRVIVVEDELGLGSNKEGGNLSLNLGGGGGGVATWEGNNGKKSRVAGGGSSSRAFCQVDDCRADLNNAKDYHRRHKVCEIHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNQDAVPNGSSPNDDQTSSYLLISLLKILSNMQPDRSNQTADQDLLTHLLRSLANQNGEQGGRNLSNLLREPENLLKEGSLSGKSEMVSTLVTNGSQGSPTVTVQNQTVSISEIQHQVMHSHDARVADQQTTFSAKPGVSNSPPAYSEARDSTAGQTKMNDFDLNDIYIDSDDGIEDIERLPVTTNLGANSLDYPWIQHDSHQSSPPQTSGNSDSASAQSPSSSTGEAQNRTDRIVFKLFGKGPSDFPLVLRAQILDWLSHSPTDIEGYIRPGCVVLTIYLRQAEVVWEELCFDLTSSLNRLLDVSDDDFWRTGWVHIRVQHQMAFIFNGQIVIDTPLPFRSNNYGKILSVSPIAVPASKTAQFSVKGINLTCPATRLLCALEGNYLDCEDTHEPMDQCSKDLDELQCIQFSCSVPAMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICVLEPLLESSDTYPDVEGAGKIQAKNQAMDFIHEMGWLLHRRQIKSRVVCLNSSTDLFPLDRFKWLMEFSVDHDWCAVVKKLLNLMLDGTVSTGDHTSLYLALSELGLLHRAVRRNSRQLVELLLRFVPQNISDKLGSEDTALVNGENQNFLFRPDAVGPAGLTALHIAAGKDGSEDVLDALTNDPCMVGIEAWNSARDSTGSTPEDYARLRGHYTYIHLVQKKINKSQGGAHVVVDIPSIPTKFDTSQKKDELCTTFEIGNAEVKKVRKDCKLCDHKLSCRTAVRKSFVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYIFRPFRWESLDYGTS 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03828 1003 Gene3D - 733 905 IPR036770 -
Mepo3g03828 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 82 890 IPR044817 GO:0003677
Mepo3g03828 1003 MobiDBLite consensus disorder prediction 210 235 - -
Mepo3g03828 1003 Gene3D - 137 207 IPR036893 GO:0003677|GO:0005634
Mepo3g03828 1003 MobiDBLite consensus disorder prediction 351 377 - -
Mepo3g03828 1003 SUPERFAMILY Ankyrin repeat 765 889 IPR036770 -
Mepo3g03828 1003 ProSiteProfiles Zinc finger SBP-type profile. 143 220 IPR004333 GO:0003677
Mepo3g03828 1003 SUPERFAMILY SBT domain 144 224 IPR036893 GO:0003677|GO:0005634
Mepo3g03828 1003 Pfam SBP domain 146 219 IPR004333 GO:0003677
Mepo3g03828 1003 MobiDBLite consensus disorder prediction 415 448 - -
Mepo3g03828 1003 FunFam Squamosa promoter-binding-like protein 14 137 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03828 Mepo-Chr3 47763226 47770191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03828 20 1003 SBP-box Gene Family AT3G60030 53.676 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo3g03828 SBP 6.2e-29 No_clan