Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03801 ATGCTGGATATTCATCAAGAACAAAGGGTCAATTTCACCGGAGACCCACCAAACTCTCAATTCCCCCACGACTTCGTCCATCTCAGTGGCAATGGTAACATAGCCGCCGTTGATTCTGGATTTCCTCCTCCTCCTCCTCCTCGACCGCCCCCTAATCATAATCATCCCATCCCTCGCAAACGACAATGGGGACCTCCTCAAGATCAAGTCGATGTTACGGGTCATGTTAAAGTTTACGTTGCACCTGTTCCTAGAACTGCATCTGAGGCTGATGTCCGCCTTGTGTTCCAAGGATATGGAACTATTGTTGAGGTTGTTCTTTTAAGGGATAAGGCAACTGGAGTTCGACAAGGAAGTTGTTTGGTGAAATATTCAACATTTGATGAAGCGGATATGGCTATTAAGGCTTTAAGCAATCAGTATACATTTCCTGGAGAATCATCACCTGTTGTTGTCAGATTTGCCGATCGGAAACGTGAACGTTTTGGGCTTCGAGACTTCTGCCAAAACATGGAAAAGAGAGATCCTCCCGAAGTGGTGGGTAAAGTTTATGTTGGTTGCATCAACAATGAAGCTTCAAAACAGGAAATTGAAGAAATATTTTCCCCTTACGGGCATATAGAAGATGTCGTCGTCTTGCGGAATCGCGGATATGGTTTTGTCAAATTTTATAACAGAGAGATGGCGTTGGCAGCAATCAAAGGGTTGGATAGAACATTCACGATGAGAGGTTGTGATCAACCATTAATTGTTCGTTTTGCGGAACCGAAGAAACCTAGGATGGGAGAATTAAGGGGCAACTACTTACCTGCGAATGCAAGTTATGGTCCCAATTCCCAAGAACCAGCAGCTTGGCCACTACCAAATTTTTGTGATCCCAATACTGGAGGAAGTAATATGCATATTGCTCCACATCATTCCAGACTTCCACACCAGCAAGTTAATGCTCATATTCCCAACTGGCAACCTGGTGCTACTGTTGTACAGCAACAATTTCCACCCCAACACGTACATTCACAATTGACTTCGATGCCTTTACGGCCACTTCAAGCTCCCAACTTGTCTTCTCAACCATTTATCACTGAGGTGCAGAGACAATTTCATCCACCAGATTCATTGGTCCAAAATATAGAGCAGCAGCTAAGTTCTCAGCTACCTACTCAGACTGAACGTTGCAATACAGTTGTTGGTAGTACCTCACCTGATCTGCATGCAAATCCCCAAGATGAAGAATTTCCAGAGTCTGACTGGAGTGAACATTACTGCCCTGATGGTAACAAGTACTACTACAACTGTGTCACTTGCGAAAGCAGATGGGAAAAGCCTGAGGAGTATGCTTTGTATGACAAAGAATCACAGAAGCAACACGAGCAAGATGGTCATAGCTTACTTCAACCACAATTGTCGTTATCTTCCTCTCAAGAAGTTTCTCAAAAGCAACAGGAAACAAATCATGATGATCACATGCAGTCAGAAACAAGTCCTGTTGTTGAACAGGTGTGA 1503 0.4391 MLDIHQEQRVNFTGDPPNSQFPHDFVHLSGNGNIAAVDSGFPPPPPPRPPPNHNHPIPRKRQWGPPQDQVDVTGHVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMEKRDPPEVVGKVYVGCINNEASKQEIEEIFSPYGHIEDVVVLRNRGYGFVKFYNREMALAAIKGLDRTFTMRGCDQPLIVRFAEPKKPRMGELRGNYLPANASYGPNSQEPAAWPLPNFCDPNTGGSNMHIAPHHSRLPHQQVNAHIPNWQPGATVVQQQFPPQHVHSQLTSMPLRPLQAPNLSSQPFITEVQRQFHPPDSLVQNIEQQLSSQLPTQTERCNTVVGSTSPDLHANPQDEEFPESDWSEHYCPDGNKYYYNCVTCESRWEKPEEYALYDKESQKQHEQDGHSLLQPQLSLSSSQEVSQKQQETNHDDHMQSETSPVVEQV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03801 500 Pfam WW domain 415 442 IPR001202 GO:0005515
Mepo3g03801 500 ProSitePatterns WW/rsp5/WWP domain signature. 417 442 IPR001202 GO:0005515
Mepo3g03801 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 256 IPR000504 GO:0003723
Mepo3g03801 500 MobiDBLite consensus disorder prediction 11 68 - -
Mepo3g03801 500 SMART rrm1_1 182 252 IPR000504 GO:0003723
Mepo3g03801 500 SMART rrm1_1 77 153 IPR000504 GO:0003723
Mepo3g03801 500 MobiDBLite consensus disorder prediction 450 500 - -
Mepo3g03801 500 PANTHER RNA BINDING PROTEIN 50 479 - -
Mepo3g03801 500 SUPERFAMILY RNA-binding domain, RBD 44 163 IPR035979 GO:0003676
Mepo3g03801 500 Gene3D - 67 162 IPR012677 -
Mepo3g03801 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 157 IPR000504 GO:0003723
Mepo3g03801 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 145 IPR000504 GO:0003723
Mepo3g03801 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 240 IPR000504 GO:0003723
Mepo3g03801 500 SMART ww_5 412 444 IPR001202 GO:0005515
Mepo3g03801 500 MobiDBLite consensus disorder prediction 384 405 - -
Mepo3g03801 500 Gene3D - 403 462 - -
Mepo3g03801 500 Gene3D - 169 262 IPR012677 -
Mepo3g03801 500 MobiDBLite consensus disorder prediction 384 417 - -
Mepo3g03801 500 MobiDBLite consensus disorder prediction 459 479 - -
Mepo3g03801 500 SUPERFAMILY RNA-binding domain, RBD 180 273 IPR035979 GO:0003676
Mepo3g03801 500 SUPERFAMILY WW domain 416 447 IPR036020 GO:0005515
Mepo3g03801 500 MobiDBLite consensus disorder prediction 39 53 - -
Mepo3g03801 500 ProSiteProfiles WW/rsp5/WWP domain profile. 414 444 IPR001202 GO:0005515
Mepo3g03801 500 CDD WW 415 444 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03801 Mepo-Chr3 47508352 47516151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03801 60 369 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 3.12e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03801 K13207 - gmx:100776162 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03801 3 47508352 47516151 Mepo3g03801 3 47508352 47516151 ECH