Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03797 ATGTCGAAGAGAAAGTTCGGATTCGAAGGTTTCGGCATAAACCGTCAATCAACCTACAGTTTCGAACGATCTCAACCTCCTCAACGTCTCTACGTTCCTCCTTCATCTCGTAAAAGCCACGACAATTTCGAAGACAACGACCTTGATAACATCGAGTACGATGATGATTCCAGAGAAGAACAATCAAACAAAGATGATAACGCCGGTGGTGGTGGTGGTGGTGAAGAGGATGAAATCGATCCATTAGATGCCTTCATGGAAGGAATACACGAGGAGATGAAATCTGCGCCTCCACCTAAGCCGAAGGAGAAGGTGGAAGATAGATACAAAGACGATTTAGAGGATGATCCAATGGAGAGTTTTTTGAGGGCGAAGAAGGATTTAGGTTTGACGTTGGCTTCGGATGCTTTGCATGCTGGATATGATTCTGATGAGGAGGTTTATGCTGCTGCTAAAGCTGTGGATGCTGGTTTGATTGATTATGATTCTGATGATAATCCTATTGTTCTTGATAAGAAGAAAATCGAACCTATTGCTCCTCTTGACCATACTGAGATTGATTATGAGCCTTTTAATAAGGATTTTTACGAGGAGTCGCCTTCAATATCAGGTATGAGTGACCTAGATGTAACTGATTACAGGAAGAGTTTGGCTATTCGGGTATCAGGTTTTGAAGTTCCTAAGCCAGTAAAAACATTTGAGGACTGTGGGTTTGCTCCACAAATTATGGGTGCTATAAAGAAACAAGGTTATGAGAAGCCGACATCTATACAATGCCAAGCTTTGCCGGTTGTGCTTTCTGGTAGAGATATCATTGGCATAGCGAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATCGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAGGAAGGTCCTATAGGAGTGATATGTGCACCTACCAGAGAATTGGCACATCAGATATATCTCGAGGCCAAGAAATTTGCTAAAGCATATGGGATACGTGTCTCTGCCGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACGCCTGGAAGATTGATAGACATGCTAAAAATGAAGGCGTTGACAATGCTCAGAGCAACTTACCTGGTGCTTGATGAGGCCGATCGAATGTTTGATCTTGGATTTGAGCCGCAAGTAAGGTCCATTGTTGGTCAGATTAGGCCGGACCGCCAAACCTTGCTCTTTTCTGCAACAATGCCTCACAAAGTCGAAAAGTTAGCCAGGGAAATCCTTTCCGATCCTATCAGAGTGACAGTGGGAGAGGTGGGGATGGCGAATGAAGATATTACTCAAGTTGTTCAAGTAATTCCTTCTGATTCTGAGAAATTGCCGTGGCTTCTGGAGAAATTGCCCGAAATGATTGATCAAGGTGATACATTAGTTTTTGCTTCCAAAAAGGCCACTGTGGATGAAATTGAAGCACAATTGGGTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAGGATCAATCTTCTCGTATGGATATTTTACAGAAATTTAAATCTGGCACCTACCATGTGCTTATTGCAACTGATGTTGCTGCTCGTGGTCTTGACATCAAGTCAATTAAAACCGTGGTAAACTTTGATATTGCTAAAGATATGGACATGCATGTTCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGACGGAGTTGCATACACTCTTATAACTCAAAAAGAAGCACGGTTTGCTGGTGAATTGGTTAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCACGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAAGAAAAGGAGGTGGGAGAAAGGGCAAAGGCAGAGGTGGGGGTGCAGGTGGCAAAGGTGTGCGCGGAGTGGATTTTGGCTTGGGCATTGGATATAGTACAGAGTCAAACAATGCATCATCTAACGCAGTTCCAGGTCGGTCTGCCGCTGTAAATTCTCTGCGAACAGGAATGATGTCCCAATTCAGGAGTAGCTTCGTTGCTGCATCATCAACCTCCCAAAATGAAGGATTCAGTAATAATACAGGCATCGCTGTTAATAAGAGACCAACACTCGCTGGCTTTGTATCTGGTGGATCAATTGGCGGCGATATAAATACTCATCAGCAAACTGCTTCATACAATCCTGCTCCTTCAGCTGTAAATTCCACTAGTCAAAATTCTGTAGTAAATCCTGGTCAGAACAACACGAACAGTCCTAAACCTAGAGAAAGGCGAAGGCCATCAGGTTGGGATAGATAG 2328 0.4373 MSKRKFGFEGFGINRQSTYSFERSQPPQRLYVPPSSRKSHDNFEDNDLDNIEYDDDSREEQSNKDDNAGGGGGGEEDEIDPLDAFMEGIHEEMKSAPPPKPKEKVEDRYKDDLEDDPMESFLRAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGLIDYDSDDNPIVLDKKKIEPIAPLDHTEIDYEPFNKDFYEESPSISGMSDLDVTDYRKSLAIRVSGFEVPKPVKTFEDCGFAPQIMGAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMLRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPHKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIEAQLGQRGFKVAALHGDKDQSSRMDILQKFKSGTYHVLIATDVAARGLDIKSIKTVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSTELMDLAMKDGRFRSKRDARKGGGRKGKGRGGGAGGKGVRGVDFGLGIGYSTESNNASSNAVPGRSAAVNSLRTGMMSQFRSSFVAASSTSQNEGFSNNTGIAVNKRPTLAGFVSGGSIGGDINTHQQTASYNPAPSAVNSTSQNSVVNPGQNNTNSPKPRERRRPSGWDR 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03797 775 MobiDBLite consensus disorder prediction 726 775 - -
Mepo3g03797 775 SMART helicmild6 490 571 IPR001650 -
Mepo3g03797 775 Pfam DEAD/DEAH box helicase 255 426 IPR011545 GO:0003676|GO:0005524
Mepo3g03797 775 MobiDBLite consensus disorder prediction 13 32 - -
Mepo3g03797 775 CDD SF2_C_DEAD 449 581 - -
Mepo3g03797 775 Gene3D - 440 615 IPR027417 -
Mepo3g03797 775 MobiDBLite consensus disorder prediction 1 105 - -
Mepo3g03797 775 FunFam probable ATP-dependent RNA helicase DDX17 193 440 - -
Mepo3g03797 775 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 462 611 IPR001650 -
Mepo3g03797 775 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 191 611 - -
Mepo3g03797 775 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 383 391 IPR000629 -
Mepo3g03797 775 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 262 437 IPR014001 -
Mepo3g03797 775 MobiDBLite consensus disorder prediction 83 105 - -
Mepo3g03797 775 Gene3D - 194 439 IPR027417 -
Mepo3g03797 775 SMART ultradead3 250 452 IPR014001 -
Mepo3g03797 775 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 231 259 IPR014014 GO:0003724
Mepo3g03797 775 Pfam Helicase conserved C-terminal domain 466 571 IPR001650 -
Mepo3g03797 775 MobiDBLite consensus disorder prediction 618 642 - -
Mepo3g03797 775 MobiDBLite consensus disorder prediction 726 761 - -
Mepo3g03797 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 440 IPR027417 -
Mepo3g03797 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 611 IPR027417 -
Mepo3g03797 775 CDD DEADc_DDX42 242 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03797 Mepo-Chr3 47433255 47438279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03797 228 581 Eukaryotic Initiation Factors Gene Family AT3G19760 32.493 3.63e-63 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03797 K12835 - gmx:100814854 1289.25