Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03762 ATGGAAGATTCTGAGGCCAAACCTGCTGAAAACCAGCAGACTGAACAAGTGTGTAGTTTCTTTAGAAAACCAGTTAATAGGAAGAATATGAGGAAGCGAACTATTGAGAATGAAGATAATGAAGATGACTCGAACAATGAAGAGTCTTTGATGCATGTTCAGAAAAAGAACGTGAAGGCTGACAATAAGTTGTTCTTTTCCACCGGCTCTTCGAAGAGCTCTGCATCTGCTAAACCGAATGAAGAATCTGAGAAACCCAGCTTTCATTTCGAGTCTTCTAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTTTGGAGACTGAGACTGATTTTTCAAGAGATGCCCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCGACAGAGAGTCTCAAAGGAAAGAGTACCGGTTCCGAGGATGTAAAATTATACAAGGGAATCAATAATTATACAGATCATAAGGCTGGATTTCGTAGAGAGCAAACAATTGCCAGTGAAAAGGCTGGTGGGTCACACGGTCCTCTCAGGGCTTCCGCTCACATAAGAGTTTCAGCAAGATTTGATTATCAGCCGGATATATGCAAGGATTATAAGGAAACTGGTTACTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGATCGAGGTGATTACAAATCTGGGTGGCAGATGGAGAAGGAATGGGATGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGAGGATGCGGAAGAGGAAGGCGCTAGTTTGAATGATGAAGATGATGATGAAGATGCATTACCATTTGCGTGTTTCATTTGTAGAAACCCATTTGTGGATCCTGTCTCAACCAAGTGTAAGCACTACTTCTGTGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAATCAGCCTACGCTTGGCATTTTTAATGTGGCTCATGAGATACGAAAGAAGATGGCCGAGGATAAATAG 984 0.4207 MEDSEAKPAENQQTEQVCSFFRKPVNRKNMRKRTIENEDNEDDSNNEESLMHVQKKNVKADNKLFFSTGSSKSSASAKPNEESEKPSFHFESSKEIQVQHDSKATATLETETDFSRDARAIRERALKQATESLKGKSTGSEDVKLYKGINNYTDHKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWDEAEKARKMRLAAGEDAEEEGASLNDEDDDEDALPFACFICRNPFVDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03762 327 MobiDBLite consensus disorder prediction 1 106 - -
Mepo3g03762 327 FunFam RING finger protein 113A 266 325 - -
Mepo3g03762 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 325 IPR013083 -
Mepo3g03762 327 MobiDBLite consensus disorder prediction 61 77 - -
Mepo3g03762 327 ProSiteProfiles Zinc finger C3H1-type profile. 190 218 IPR000571 GO:0046872
Mepo3g03762 327 SMART ring_2 268 305 IPR001841 -
Mepo3g03762 327 SUPERFAMILY CCCH zinc finger 189 221 IPR036855 GO:0046872
Mepo3g03762 327 CDD RING-HC_RNF113A_B 261 314 - -
Mepo3g03762 327 SMART c3hfinal6 190 217 IPR000571 GO:0046872
Mepo3g03762 327 PANTHER ZINC FINGER PROTEIN 183 10 327 IPR039971 -
Mepo3g03762 327 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 216 IPR000571 GO:0046872
Mepo3g03762 327 Gene3D - 188 222 - -
Mepo3g03762 327 ProSitePatterns Zinc finger RING-type signature. 283 292 IPR017907 -
Mepo3g03762 327 ProSiteProfiles Zinc finger RING-type profile. 268 306 IPR001841 -
Mepo3g03762 327 Pfam Zinc finger, C3HC4 type (RING finger) 267 309 - -
Mepo3g03762 327 SUPERFAMILY RING/U-box 267 310 - -
Mepo3g03762 327 MobiDBLite consensus disorder prediction 78 98 - -
Mepo3g03762 327 FunFam Zinc finger CCCH domain-containing protein 1 188 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03762 Mepo-Chr3 47130677 47134069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03762 9 327 C2H2 Transcription Factor Family AT1G01350 69.906 1.69e-164 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo3g03762 zf-C3HC4_3 3.3e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03762 K13127 - gmx:100787434 566.229