Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03748 ATGGGAACGCGACTGCGGAAATCATGTGTAGATGAAAGCAGGAGTGCTGGTTTTCCATCTAGCCGGAGGGAGCAGATGACGCAGACAGCCGCTGCTCTCAAATTAAACCATCTTGACATACATGATGATGATGCAGGATCACAAGGAGCAGTTGTTAGCAAGAAGAAAAAGAGGGGCCAACAACGGGATGCTAGAAAAAATAAGAGTAGAAGAGGGCTCCTCCAAATTAGCATGAAAGTGTTGGAGAAGGTAGAAAGTAAGGGAAGAACAACTTTCAATGAGGTGGCAGATGAACTTGTGGCTGAACTTGCTGATCCAATGAATAGTGTTTTTTCCCCTAATAAGCAACAATATGATGAGAAAAATGTCCGTCAAAGGGCCTATGATGTTCTGAATGTTCTCATGGCAATGGATATTATTTCCAAGGATAAAAAGGAAATACAGTGGAAGGGTCTTCCTCCTAATGCTATTGAGAAGCTAAAGATCGAACGTCTAGGGATCAGGAATAGAGTTGAAAGCAAAGCATCCTATCTAAAGGAGCTTGAGGAACAAGTAAGTCCATTCCACTCTCTAATAGATTTAATACGGGGATGA 594 0.4226 MGTRLRKSCVDESRSAGFPSSRREQMTQTAAALKLNHLDIHDDDAGSQGAVVSKKKKRGQQRDARKNKSRRGLLQISMKVLEKVESKGRTTFNEVADELVAELADPMNSVFSPNKQQYDEKNVRQRAYDVLNVLMAMDIISKDKKEIQWKGLPPNAIEKLKIERLGIRNRVESKASYLKELEEQVSPFHSLIDLIRG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03748 197 PANTHER TRANSCRIPTION FACTOR DP 16 192 IPR015648 GO:0005667|GO:0051726
Mepo3g03748 197 MobiDBLite consensus disorder prediction 41 71 - -
Mepo3g03748 197 MobiDBLite consensus disorder prediction 1 27 - -
Mepo3g03748 197 Gene3D - 61 158 IPR036388 -
Mepo3g03748 197 SMART E2F_TDP_2 68 151 IPR003316 GO:0005667|GO:0006355
Mepo3g03748 197 SUPERFAMILY E2F-DP heterodimerization region 156 193 IPR037241 -
Mepo3g03748 197 Pfam E2F/DP family winged-helix DNA-binding domain 71 151 IPR003316 GO:0005667|GO:0006355
Mepo3g03748 197 FunFam Transcription factor-like protein DPB 63 156 - -
Mepo3g03748 197 SUPERFAMILY "Winged helix" DNA-binding domain 71 152 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03748 Mepo-Chr3 47027036 47030621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03748 40 192 E2F-DP Transcription Factor Family AT5G02470 44.025 1.43e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mepo3g03748 E2F_TDP 8.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03748 K04683 - gmx:100781272 242.276