Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03745 ATGGTGTCTCTCAAATTGCAAAAACGTCTCGCTTCCAGCGTCCTCAAGTGCGGCCGTGGCAAAGTTTGGCTTGATCCTAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGCTGGTTAAGGATGGGTTTATCATCAGGAAACCCACTAAGATTCACTCCAGGTCGCGTGCTCGTAGGATGAAGGAAGCTAAGAGGAAAGGAAGACACTCTGGATATGGTAAGAGGAAGGGTACCAGAGAGGCAAGGCTTCCCACAAAGATTCTTTGGATGAGGAGAATGCGTGTTCTCAGACGTTTGCTCCGCAAGTACCGTGAGGCCAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTCTTTAAGAATAAGAGAGTTCTGATGGAGAGCATTCACAAGTCCAAAGCTGAGAAGGCTAGAGAGAAGACCCTGTCTGACCAGTTTGAGGCCAAACGTGCCAAGAACAAGGCCAGCCGTGAGAGGAAGCATGCTAGGAGGGAGGAGCGTTTCGCTCAAGGTCCTGGAGGAGAAAAGCCAGCAGAAGCTCCTGCTGCTCCACCTGCTGCTGCCGCAAAGCCAACCCAGACCCAACCGCAAAAGAAATCAAAGAAGGCCGCTGCAGTCTGA 660 0.4955 MVSLKLQKRLASSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPGGEKPAEAPAAPPAAAAKPTQTQPQKKSKKAAAV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03745 219 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Mepo3g03745 219 FunFam Ribosomal protein L19 1 56 - -
Mepo3g03745 219 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mepo3g03745 219 Gene3D - 57 186 - -
Mepo3g03745 219 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Mepo3g03745 219 MobiDBLite consensus disorder prediction 144 219 - -
Mepo3g03745 219 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mepo3g03745 219 FunFam Ribosomal protein L19 57 189 - -
Mepo3g03745 219 MobiDBLite consensus disorder prediction 57 85 - -
Mepo3g03745 219 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Mepo3g03745 219 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Mepo3g03745 219 MobiDBLite consensus disorder prediction 144 185 - -
Mepo3g03745 219 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Mepo3g03745 219 MobiDBLite consensus disorder prediction 57 79 - -
Mepo3g03745 219 PANTHER 60S RIBOSOMAL PROTEIN L19 1 189 IPR039547 GO:0003723|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03745 Mepo-Chr3 47008921 47010948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03745 1 197 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 86.500 3.30e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03745 K02885 - ming:122085408 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03745 3 47008921 47010948 Mepo3g03745 3 47008921 47010948 ECH