Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03719 ATGAGTAGACATTCGAGCAGAACCGTGTATGTTGGAAATTTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTATGAAGTATGGACACATAACTCACATTGACCTAAAGGTTCCGCCAAGGCCCCCTGGCTATGCATTTGTCGAGTTTGAAGATGTTCAAGATGCCGAGGATGCAATTCGTGGTCGTGATGGTTATGATTTTGATGGGCACCGATTACGGGTGGAGGCTGCACACGGTGGTCGTGGTAATTCATCTTCCAGAGATCGATACAGCAGTCACAGCAATGGCCGAGGTGGACGCGGAGTATCCAGGCGCTCTGAATATCGTGTTCTAGTCAATGGACTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCTGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGGGGTACTACTGGGATTGTGGATTACACAAACTACGATGATATGAAATATGCTATCAAAAAGCTTGATGGCTCCGAGTTCCGGAATGCTTTTTCCAAGTCTTACGTTCGTGTGAGGGAATATGATTCGAGGCGGGACTCTAGAAGTCCTGGTCGTGGGCCTTCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGTAGTCGTAGCCGCAGCCGTAGCGACAGTCCAGGCCATAGCAGAAGCAAATCTCCCAAGGGTAAATCCTCACAACGTTCACCAGCTAAATCTCCAGCAAGATCAGTTTCTCGTTCTCGCTCCAGATCTAGATCCCGCTCTTTATCAGGATCGCGGTCAAGGTCTAGGTCTCCATTACCTCTGCGTAATAAAAGCCCCAAAAAGCGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCCATAGCAAGAGTTTGTCCAGGTGA 897 0.4849 MSRHSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVLVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDGSEFRNAFSKSYVRVREYDSRRDSRSPGRGPSHSRGRSYSRSRSRSRSRSDSPGHSRSKSPKGKSSQRSPAKSPARSVSRSRSRSRSRSLSGSRSRSRSPLPLRNKSPKKRSASRSPSRSRSHSKSLSR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03719 298 MobiDBLite consensus disorder prediction 272 287 - -
Mepo3g03719 298 MobiDBLite consensus disorder prediction 87 102 - -
Mepo3g03719 298 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Mepo3g03719 298 CDD RRM1_SF2_plant_like 8 78 - -
Mepo3g03719 298 CDD RRM2_SF2_plant_like 111 186 - -
Mepo3g03719 298 MobiDBLite consensus disorder prediction 79 108 - -
Mepo3g03719 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Mepo3g03719 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Mepo3g03719 298 MobiDBLite consensus disorder prediction 185 199 - -
Mepo3g03719 298 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 265 - -
Mepo3g03719 298 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Mepo3g03719 298 MobiDBLite consensus disorder prediction 213 227 - -
Mepo3g03719 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Mepo3g03719 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Mepo3g03719 298 Gene3D - 2 110 IPR012677 -
Mepo3g03719 298 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Mepo3g03719 298 MobiDBLite consensus disorder prediction 185 298 - -
Mepo3g03719 298 MobiDBLite consensus disorder prediction 228 247 - -
Mepo3g03719 298 SMART rrm1_1 8 78 IPR000504 GO:0003723
Mepo3g03719 298 SMART rrm1_1 112 183 IPR000504 GO:0003723
Mepo3g03719 298 Gene3D - 111 188 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03719 Mepo-Chr3 46799163 46803727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03719 2 189 Eukaryotic Initiation Factors Gene Family AT4G34110 25.888 3.95e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03719 K12890 - gmx:100789847 343.969