Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03714 ATGCTTGAGGGTTGCGCTCCGATTCCCCAATTTCAATTTCCTTCACAACGCATCGCTGTTATCCTTAACAGTACCCAGCCAGCAGAATTTGAGGAGGACTCAAACAATGAGGAGTCTCAGGCATATTCCTCCCCACAGAGTAACATGAAACCTGACAATAGGTTACTCTTTTCCACCGCTAAACCGAATGAAGCATCCAAGAAACTTAACTTTCATTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTTTGGACACTGAGACTCTTTTTTCAAGAGATACGAGTTCCATCCATGGGTCACATGGTCCTCTCCGACCTTCAACTCATATTAGAGTTTCATCAAGAATCGATTATCAACCCGACGTATGCATAGACTTCAAGGAGACCGGATATTGTGGCTACGGCGATTCATGCAAGTTTTTGCACGACTGA 453 0.4327 MLEGCAPIPQFQFPSQRIAVILNSTQPAEFEEDSNNEESQAYSSPQSNMKPDNRLLFSTAKPNEASKKLNFHFESSKEIQVQHDSKATATLDTETLFSRDTSSIHGSHGPLRPSTHIRVSSRIDYQPDVCIDFKETGYCGYGDSCKFLHD 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03714 150 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Mepo3g03714 150 ProSiteProfiles Zinc finger C3H1-type profile. 124 150 IPR000571 GO:0046872
Mepo3g03714 150 PANTHER ZINC FINGER PROTEIN 183 105 150 IPR039971 -
Mepo3g03714 150 SUPERFAMILY CCCH zinc finger 122 150 IPR036855 GO:0046872
Mepo3g03714 150 Gene3D - 106 150 - -
Mepo3g03714 150 MobiDBLite consensus disorder prediction 24 54 - -
Mepo3g03714 150 MobiDBLite consensus disorder prediction 37 54 - -
Mepo3g03714 150 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 150 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03714 Mepo-Chr3 46773210 46774095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03714 21 150 C2H2 Transcription Factor Family AT1G01350 40.323 7.28e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo3g03714 zf-CCCH 1.1e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03714 K13127 - gmx:100787434 145.206