Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03693 ATGGATGATGTATTTTATGAAATAGATCCTACTGCTGAAGTGGTTGCATTATCTCCAACAACATTAATGGCAACAAATAGATTTGTGTGTGAGATATGCAACAAGGGATTTCAAAGGGACCAGAATCTTCAGTTACACCGAAGAGGTCACAATCTTCCATGGAAACTTAGGCAAAGAACAAGTGCAGAGGTGAAGAAAAAGGTGTATGTGTGCCCTGAGCCATCATGTGTTCACCATAATCCAGCTCGTGCATTAGGTGACCTTACTGGCATCAAAAAACATTTTAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCTGTTCAATCAGATTGGAAGGCTCACCAGAAAACATGTGGTACTAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGAGAGACAGCTTTATTACCCACAGAGCATTCTGTGATGCACTAACCGAAGAAAACAACAGAGTAAACCAAGGATTAACTAGTGGCATGCCACCAAACTTGCAAAGCCAAATGCATGATCCTATTTCTACCATGCCTCTAAAACCTGTTTCCAACACTTCCTCAGAATTAAACAATGACTATGACCCTAAAAACTCACTAAGATCCCCAACTCAAGAACATGCTCCAACATCATTCAGATCAACCAACAATGCATGTGGTGGCATGTTCTCAACTAGTGCAGGTGCACTTTTTGGTGGCCCAAAAACCTTGCCTCCATCTTCTTCAACCCTTCAACTCAGTTCCAATTCCAACAGCTTCAATTACTTCAATGACAGTAAAAATGGAGGACTAATTGCTGGCATGGCTCAAATGTCGGCAACTGCTTTACTACAAAAAGCAGCACAAATGGGTGCTACTGCAAGCAATAGTGGGAACTCTTCCATGATGCAGAAAAGCTTTGTTAGTAGCATGGTTAGTCCTAATCATGTTTCTGGTTCCATCATGATACATCATAACCAAAACCAACCCTCTTATGAACACTTTAATCCACTACAGCATGAATTGGCTGGTGTTAGTGGTGGAGGAGCATTCACTAACCAATTGTTTCAAAAAGAACAACAAGAAATTTCATTACTATTTGATAACAATACCAATGTGTCTACAATGAATAATGATATTGGAATGTTTAGCCATGGATTGATGAAGAATGTTGCACAAGAGGTTAGTAATTGTTCAAATTTGATACATGGAAATGATGTGGCAACAGTTCATGATTTCTTGGGTATTGGTGGTTCAAGCTCAAGTTTGCATGAACCACAACAACAGAGATTGGAAGCATTAAGTCAACAGAGGTTGGAAATTATGAATAATTTTCATCATCATCATCATCATCTTCCACATGAGGATTCAGCAATGGAGAAATCAATTTGGGATGTTTGA 1401 0.3926 MDDVFYEIDPTAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSAEVKKKVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQMHDPISTMPLKPVSNTSSELNNDYDPKNSLRSPTQEHAPTSFRSTNNACGGMFSTSAGALFGGPKTLPPSSSTLQLSSNSNSFNYFNDSKNGGLIAGMAQMSATALLQKAAQMGATASNSGNSSMMQKSFVSSMVSPNHVSGSIMIHHNQNQPSYEHFNPLQHELAGVSGGGAFTNQLFQKEQQEISLLFDNNTNVSTMNNDIGMFSHGLMKNVAQEVSNCSNLIHGNDVATVHDFLGIGGSSSSLHEPQQQRLEALSQQRLEIMNNFHHHHHHLPHEDSAMEKSIWDV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03693 466 Gene3D Classic Zinc Finger 9 74 - -
Mepo3g03693 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 50 IPR013087 -
Mepo3g03693 466 SMART c2h2final6 28 50 IPR013087 -
Mepo3g03693 466 SMART c2h2final6 104 124 IPR013087 -
Mepo3g03693 466 SMART c2h2final6 69 99 IPR013087 -
Mepo3g03693 466 SUPERFAMILY beta-beta-alpha zinc fingers 27 125 IPR036236 -
Mepo3g03693 466 MobiDBLite consensus disorder prediction 163 220 - -
Mepo3g03693 466 Pfam Zinc finger, C2H2 type 28 50 IPR013087 -
Mepo3g03693 466 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Mepo3g03693 466 Gene3D Classic Zinc Finger 82 162 - -
Mepo3g03693 466 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 437 IPR031140 -
Mepo3g03693 466 FunFam protein indeterminate-domain 12-like 7 75 - -
Mepo3g03693 466 FunFam protein indeterminate-domain 5, chloroplastic-like 82 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03693 Mepo-Chr3 46613380 46615419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03693 9 310 IDZ Gene Family AT3G50700 54.462 1.47e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g03693 zf-C2H2 0.0046 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03693 - - gmx:100779705 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03693 3 46613380 46615419 Mepo3g03693 3 46613380 46615419 ECH