Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03662 ATGGCGGAAACAAAGGAAGAGAGTAAATCTAACAACGAAGAGAGTGTGAAATTGTTCGTAGGTCAAGTACCGAAACACATGACGGAAGATGAGTTACTTACATTGTTCAAAGAATTTGCTATAGTTGACGAAGTCAACATCATCAAAGACAAAGCTACACGCGCTTCTCGAGGTTGTTGTTTCGTGATTTGTCCTTCTAGAGATGAAGCTGATAAGGCCGTTAATGCGTGTCACAATAAGAAAACATTACCTGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAACATTTCTGAAGTCGAAGTATCCACACTTTTCTCCAAGTACGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAACAAACAAGTAAAGTAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCACAAAATGGAGGGTTCAAGTGTTCCATTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGAGCCCAGAAAGCACAGTCTCAAGCTTCTAATGTGGGACATGATTCTCAGCATCCTTCATTATTTGGAGCCATGCCTATGGGTTATGTTCCTCCATATAACGGTTATGGTTATCAGGCTCCTGGAAGTTATGGGCTCATGCCGTACCGCATGCCGCCACCAATGCAGAATCAACCTGGTTACCACAATATGATGCCTCACATGAATCAAGGAAATGCATTGCGGCCAGATCTCGGTCCCAATATGAATCCTAGAAACTATCATGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTGCTGTGCCAGGGCTACAACATCCAATGGCATATCCTGGAGGAATGATTAGTCCAAGACCTTTGAACAGTCCTCCTGGTTCTGTTTCACCTTCCGGTGGAAATGGCAACTCCGCTACATCATCAGGGTCCAGCAAAAATTCTGGTGGTGGTCAAGCTGAAGGACCACCTGGTGCAAATCTGTTTATCTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTAATGCCTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGACAAAGCGACCGGCGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAGGCTGCTCAATCTGCTATTAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAACATAAGAGGGACAACAAACCCGGTAAACCTTACTGA 1305 0.4261 MAETKEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSTLFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPPMQNQPGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGLQHPMAYPGGMISPRPLNSPPGSVSPSGGNGNSATSSGSSKNSGGGQAEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQHKRDNKPGKPY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03662 434 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Mepo3g03662 434 PRINTS Paraneoplastic encephalomyelitis antigen family signature 16 31 IPR002343 GO:0003723|GO:1990904
Mepo3g03662 434 PRINTS Paraneoplastic encephalomyelitis antigen family signature 166 183 IPR002343 GO:0003723|GO:1990904
Mepo3g03662 434 PRINTS Paraneoplastic encephalomyelitis antigen family signature 109 124 IPR002343 GO:0003723|GO:1990904
Mepo3g03662 434 PRINTS Paraneoplastic encephalomyelitis antigen family signature 124 136 IPR002343 GO:0003723|GO:1990904
Mepo3g03662 434 MobiDBLite consensus disorder prediction 304 348 - -
Mepo3g03662 434 CDD RRM3_CELF1-6 351 423 - -
Mepo3g03662 434 FunFam RNA-binding protein BRN1 315 426 - -
Mepo3g03662 434 Gene3D - 321 426 IPR012677 -
Mepo3g03662 434 CDD RRM1_2_CELF1-6_like 17 93 - -
Mepo3g03662 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 170 IPR000504 GO:0003723
Mepo3g03662 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 351 421 IPR000504 GO:0003723
Mepo3g03662 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 82 IPR000504 GO:0003723
Mepo3g03662 434 SUPERFAMILY RNA-binding domain, RBD 104 429 IPR035979 GO:0003676
Mepo3g03662 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 185 IPR000504 GO:0003723
Mepo3g03662 434 Gene3D - 2 99 IPR012677 -
Mepo3g03662 434 Gene3D - 100 195 IPR012677 -
Mepo3g03662 434 MobiDBLite consensus disorder prediction 317 341 - -
Mepo3g03662 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Mepo3g03662 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 349 427 IPR000504 GO:0003723
Mepo3g03662 434 SMART rrm1_1 17 93 IPR000504 GO:0003723
Mepo3g03662 434 SMART rrm1_1 105 181 IPR000504 GO:0003723
Mepo3g03662 434 SMART rrm1_1 350 423 IPR000504 GO:0003723
Mepo3g03662 434 MobiDBLite consensus disorder prediction 187 210 - -
Mepo3g03662 434 FunFam RNA-binding protein BRN1 isoform X1 101 194 - -
Mepo3g03662 434 MobiDBLite consensus disorder prediction 195 209 - -
Mepo3g03662 434 PANTHER RNA BINDING PROTEIN 14 427 - -
Mepo3g03662 434 FunFam RNA-binding protein BRN1 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03662 Mepo-Chr3 46330598 46335382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03662 350 432 Eukaryotic Initiation Factors Gene Family AT4G34110 36.364 3.31e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03662 3 46330598 46335382 Mepo3g03662 3 46330598 46335382 ECH