Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03657 ATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCGTATCCCGGAGATGTTTTTTATTTACATTCTCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTTAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGAGTATTTCTGTTTCCAGAGTTGGGTTGGCGGCTCAAATTAAAGCCATGAAACAGGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACAATCCCAATCAGCTCCTCTCACTGTAGAAGAACATATAATAACTATTTATACTGGAACGAATGGTTATCTTGATTCATTAGAAATTGATCAGGCACTTGAGCCCGCTTGGATCACATCTAGACAAATAGAAGCAGGGCGACGGGCAATGTCACGAAATGTTCGCCGAGGTGGGCAAATATGGGTACGCATATTTCCAGACAAACTTGTTACAGTAAGACCTAACGAAACGCGTATGGGTTCGGGAAAAGGATCTCCCGAATATTGGATAGAAAAAAATGATATGATTCAACCTCAAACCTATTTAAATGTAGCCGATAATAGCGGAGCCCGCGAATTGATGTGTATTCGAATCATAGGAGCTAGTAATCGACAGTATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAAAAAGCAGTACCAAATTCATCTTTAGAAAGATCTGAAGTGATCAGGGCTGTAATTGTACGTACTTGTAAAGAACTAAAACGTAGTAATGGTATAATAATAAAGTATGATGATAATGCGGCGGTTCTCATTGATAAAGAAGGAAATCCAAAAGGAACTCGAATTTTTTCCGCAATAGCTCGAGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGGTATTATAA 1098 0.3843 MSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVLAYIPTNVISITDGQIFLSADLFNAGIRPAINVSISVSRVGLAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEHIITIYTGTNGYLDSLEIDQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKLVTVRPNETRMGSGKGSPEYWIEKNDMIQPQTYLNVADNSGARELMCIRIIGASNRQYAYIGDIVVAVIKKAVPNSSLERSEVIRAVIVRTCKELKRSNGIIIKYDDNAAVLIDKEGNPKGTRIFSAIARELRQLNFTKIVSLAPEVL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03657 365 NCBIfam 50S ribosomal protein L14 244 365 IPR005745 GO:0003735|GO:0006412|GO:0015934
Mepo3g03657 365 ProSitePatterns Ribosomal protein L16 signature 1. 204 215 IPR020798 GO:0003735|GO:0005840|GO:0006412
Mepo3g03657 365 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 100 182 - -
Mepo3g03657 365 Gene3D Ribosomal protein L14 244 365 IPR036853 GO:0003735|GO:0005840|GO:0006412
Mepo3g03657 365 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 1 92 IPR000194 GO:0005524
Mepo3g03657 365 SUPERFAMILY Ribosomal protein L16p/L10e 180 239 IPR036920 GO:0003735|GO:0005840|GO:0006412
Mepo3g03657 365 SMART Ribosomal_L14_2 244 365 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mepo3g03657 365 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 182 IPR005294 GO:0015986|GO:0045261|GO:0046933
Mepo3g03657 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 95 IPR027417 -
Mepo3g03657 365 CDD Ribosomal_L16_L10e 180 239 IPR016180 GO:0003735|GO:0005840|GO:0006412
Mepo3g03657 365 PRINTS Ribosomal protein L16 signature 233 262 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mepo3g03657 365 PRINTS Ribosomal protein L16 signature 187 198 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mepo3g03657 365 PRINTS Ribosomal protein L16 signature 203 232 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mepo3g03657 365 Pfam Ribosomal protein L16p/L10e 180 240 IPR016180 GO:0003735|GO:0005840|GO:0006412
Mepo3g03657 365 Hamap 50S ribosomal protein L14 [rplN]. 244 365 IPR000218 GO:0003735|GO:0005840|GO:0006412
Mepo3g03657 365 Gene3D - 1 171 - -
Mepo3g03657 365 ProSitePatterns ATP synthase alpha and beta subunits signature. 83 92 IPR020003 GO:0005524
Mepo3g03657 365 SUPERFAMILY Ribosomal protein L14 244 365 IPR036853 GO:0003735|GO:0005840|GO:0006412
Mepo3g03657 365 FunFam 50S ribosomal protein L14, chloroplastic 244 365 - -
Mepo3g03657 365 Pfam ATP synthase alpha/beta chain, C terminal domain 99 183 IPR000793 GO:0015986
Mepo3g03657 365 ProSitePatterns Ribosomal protein L14 signature. 303 329 IPR019972 -
Mepo3g03657 365 ProSitePatterns Ribosomal protein L16 signature 2. 227 238 IPR020798 GO:0003735|GO:0005840|GO:0006412
Mepo3g03657 365 Gene3D Ribosomal protein L10e/L16 178 242 IPR036920 GO:0003735|GO:0005840|GO:0006412
Mepo3g03657 365 FunFam ATP synthase subunit alpha, mitochondrial 1 99 - -
Mepo3g03657 365 CDD ATP-synt_F1_alpha_C 103 180 IPR000793 GO:0015986
Mepo3g03657 365 NCBIfam 50S ribosomal protein L16 180 240 IPR000114 GO:0003735|GO:0006412|GO:0019843
Mepo3g03657 365 Pfam Ribosomal protein L14p/L23e 244 365 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03657 Mepo-Chr3 46304173 46305981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03657 251 361 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.522 4.49e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03657 K02111 - mtr:120580175 320.087