Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03596 ATGGCTATGCAAACTGTTTATCTAAAAGAACATGATGGAATTGCACACAATTTTGTGGGGCAACTATCATCTGGTACTAATAATTCAGCTGCTGCACCATGGTGGAGTGGTTTTGGATCTCAATCCCTTTATGGAGAGTCTGGTGGCCAAATCAAATCCTTTTCATTGGAGCCACCTATGTCTGCTGTTGACCAACTTGCTACAAGTAAGCAATCTGCTAGAGGAACTGAACATGTGTTTGGGAAAGGGCATACCAAACACTTTACCATCTTTCCAGATGATTTTAAAATGCCAGGTGATGCACAAAAGACTCATACAGCCATATCATTGCAGTCAGCAGTCCCTGATACCCCGAATCGCTTTGAGCTGGGATTTGGTCAACCTATGATCTGCACAAAGTATCCCTATGCAGATCAATTTTATGGACTCATCTCAACCTATGGACCTCAAATTCAAGGACGTATTATGCTGCCCCTTAACATGACATCTGATGATGGACCAATTTATGTGAATGCTAAGCAGTACAATGGAATCATTAGACGCCGGCAGTCCCGCGCCAAAGCTGTACTTGGTCACAAATTGATTAAACGTAACAAGCCCTACATGCACGAGTCACGCCATCTCCATGCAATGCGGCGACCGAGAGGATGTGGTGGTCGTTTCTTAAACACAAAGAAGTCTGCCAATGGAGATGGTAAAACTGGAAGTAAAGTGCATAAATTCGGCGGTCAACAATTGCAGTTCAGTGGTTCTCAGAGTTCTGAACTCCTTGAATCTGATATTGGAACTTTAAACTCTTCAAAGGAAACTAATGGAAGCAGTCCAAATATTTCTGGATCAGAGGTGACTAGTTTGTATTCGAGGGGAAATCTTGAGAGCTTTACTGTCAATCACCTTGGATCTTCTGTCCTCTCTATCGATGGTGGGCGTGGTGTTATCATGCCGACCAAATGGGTAACAGCTGGCAACTGCTGTAACCTTAAAGCTTGA 990 0.4343 MAMQTVYLKEHDGIAHNFVGQLSSGTNNSAAAPWWSGFGSQSLYGESGGQIKSFSLEPPMSAVDQLATSKQSARGTEHVFGKGHTKHFTIFPDDFKMPGDAQKTHTAISLQSAVPDTPNRFELGFGQPMICTKYPYADQFYGLISTYGPQIQGRIMLPLNMTSDDGPIYVNAKQYNGIIRRRQSRAKAVLGHKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKKSANGDGKTGSKVHKFGGQQLQFSGSQSSELLESDIGTLNSSKETNGSSPNISGSEVTSLYSRGNLESFTVNHLGSSVLSIDGGRGVIMPTKWVTAGNCCNLKA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03596 329 ProSiteProfiles NF-YA/HAP2 family profile. 164 224 IPR001289 GO:0003700|GO:0006355
Mepo3g03596 329 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 63 283 IPR001289 GO:0003700|GO:0006355
Mepo3g03596 329 Gene3D - 164 226 - -
Mepo3g03596 329 PRINTS CCAAT-binding transcription factor subunit B signature 198 221 IPR001289 GO:0003700|GO:0006355
Mepo3g03596 329 PRINTS CCAAT-binding transcription factor subunit B signature 167 189 IPR001289 GO:0003700|GO:0006355
Mepo3g03596 329 SMART cbf3 163 224 IPR001289 GO:0003700|GO:0006355
Mepo3g03596 329 MobiDBLite consensus disorder prediction 213 243 - -
Mepo3g03596 329 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 167 221 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03596 Mepo-Chr3 45737750 45741712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03596 34 328 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.949 2.15e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mepo3g03596 CBFB_NFYA 8.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03596 K08064 - gmx:100527677 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03596 3 45737750 45741712 Mepo4g02240 4 30197367 30200431 PCT