Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03595 ATGGCTACTGCAACAGCTTATGTTTCATCTTCACTCTTCAATAGAATCAACAACCTCTCATTCACACACTCTTCCATTTCTCTCACCACCACCAACTTCCCTCAAAGACCCATTTCCCATAAACCCTTCAATCTTACCCTCAAGCCTCAAAGTTTCAATCTTTCATCTCTCCCACTTCAATCTCTTCACCCTCCATTCGTTGCTACAGATGAATTTGAAACTTCTCAGGACACCATTATTTCCCAACAAGAAGAACCAGAACCAGAAACCTCTGATAAACCAAAGCAAGATGAAGAACAGACAGTAACAACCTCAGACGATGCCAGAAGGCTCTATGTTGGAAATTTGCCATTTTCAATGACTTCTTCGCAATTGGCTGAGATTTTTGCAGAAGCTGGCACCGTTGTGTCTGTTGAGATTGTGTATGATCGAGTTACTGACAGAAGCAGAGGATTTGCATTTGTTACGATGAAAAGTGTTGAAGAAGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGAGTGCTAAGGTAAACTTTCCAGAAGTGCCAAAAGGAGGTGAAAGGTTAGTAATGGGGCAAAAAGTAAGGAACAGCTACAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCCGGAAACCTTGGTTGGGGACTGAACTCTCAGGATCTTAGAGATGCCTTTGATGAACAGCCGGGCTTATTGGGTGCTAAGGTCATCTATGAGAGGGACAATGGAAGATCTCGGGGTTTTGGATTTGTCACTTTTGAAACTGCTGAGCATTTAGAGGCTGCTTTGAACGCCATGAACGGTGTGGAGGTTCAAGGCAGGCCATTGCGATTGAATTTGGCTGCAGCAAGGACATCTCCATCTCCTCCAGTAATTGAAGAAAATACAAAAAACAACGTTGAAAGCTCAGAATTGGTGTCTAGTGCCAGCACGTGA 957 0.4357 MATATAYVSSSLFNRINNLSFTHSSISLTTTNFPQRPISHKPFNLTLKPQSFNLSSLPLQSLHPPFVATDEFETSQDTIISQQEEPEPETSDKPKQDEEQTVTTSDDARRLYVGNLPFSMTSSQLAEIFAEAGTVVSVEIVYDRVTDRSRGFAFVTMKSVEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGLNSQDLRDAFDEQPGLLGAKVIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLAAARTSPSPPVIEENTKNNVESSELVSSAST 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03595 318 SMART rrm1_1 213 286 IPR000504 GO:0003723
Mepo3g03595 318 SMART rrm1_1 110 183 IPR000504 GO:0003723
Mepo3g03595 318 PANTHER OS02G0815200 PROTEIN 37 291 - -
Mepo3g03595 318 CDD RRM1_PSRP2_like 110 189 - -
Mepo3g03595 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Mepo3g03595 318 CDD RRM2_NsCP33_like 213 288 - -
Mepo3g03595 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Mepo3g03595 318 Gene3D - 193 296 IPR012677 -
Mepo3g03595 318 SUPERFAMILY RNA-binding domain, RBD 209 293 IPR035979 GO:0003676
Mepo3g03595 318 MobiDBLite consensus disorder prediction 86 105 - -
Mepo3g03595 318 MobiDBLite consensus disorder prediction 74 107 - -
Mepo3g03595 318 SUPERFAMILY RNA-binding domain, RBD 105 186 IPR035979 GO:0003676
Mepo3g03595 318 Gene3D - 68 192 IPR012677 -
Mepo3g03595 318 FunFam 33 kDa ribonucleoprotein, chloroplastic 194 298 - -
Mepo3g03595 318 MobiDBLite consensus disorder prediction 290 318 - -
Mepo3g03595 318 MobiDBLite consensus disorder prediction 296 318 - -
Mepo3g03595 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 179 IPR000504 GO:0003723
Mepo3g03595 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 284 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03595 Mepo-Chr3 45733645 45735900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03595 96 288 Eukaryotic Initiation Factors Gene Family AT3G16380 32.995 2.69e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03595 - - tpra:123890310 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03595 3 45733645 45735900 Mepo4g01582 4 20822955 20825646 PCT