Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03591 ATGGATCATGATGAAATCGAGGTTCCTTCATTCTTTGTCTGCCCCATATCATTAGAAATCATGAAGGATCCAGTAACAGTTTCAACAGGTATAACCTACGACAGAGAAAGTATTGAAAAATGGCTATTTGCAAAGAAAAACATGACATGTCCTGTTACAAAACAACAGCTATCAGATTACACTGATCTAACACCAAACCACACTCTTAGAAGACTCATTCAAGCTTGGTGTACATTAAACGCTTCACAAGGCATTGAAAGGATTCCAACTCCAAAACCACCAATCAACAAAACCCAAATCACAAAACTCATCAAAGAAGCTTCTCATTCATCTCTCACTGTGCAGCTTAAATGCCTGAAAAGACTTAGATCTATGGCTTCTGGAAGTGAAACAAACAAACGTTGCATAGAAGATGCAGGTGCTGTTGAGTTTATAGCTTCTATTGTAATAAACAATAGTTGCAACATTGACTTTGTTAACAACTCTGGATCTTTATCAGAGACTAACACTGTTGATGAAGCATTAAGCATACTTCATAATCTTCATGTGTCTGAAGCTGGATTGAAGAAACTACTGGCTTTCAGAAACGGCGAATTCATTGAGTCCTTAACAAAAGTTATGCAGAAAGGTTTCTTTGAGTCAAGAGCTTATGCAGTTTTCTTATTAAAATCTATGTCAGAAGTAGCTGAACCAGTGCAGTTACTACATCAAAAAATTGAGTTGTTCATTGAATTAGTACAAGTTTTGAAGGATCAAATATCACAGAAAGTATCAAAAGCAGCACTTCAGATCCTAATTGCACTCTGTCCATGGGGAAGAAACAGAATCAAAGGTGTTGAGGCTGGAACAGTTCCTGTTTTGATAGAACTTCTATTAGAAAATTGCAAAGACAGAAAACCAAATGAAATGATGTTGATCCTGTTGGAGAATCTTTGTCAATGTGCTGAAGGAAGAGCTGAACTTTTGAGACATGCAGCAGGTCTTGCTGTTGTTTCTAAGAAGATTCTAAGGGTTTCAACCGTCGCAAACGATAGAGCTGTAAGGATTCTGTTGTCTGTTTCAAGATTCTCTGCTACTCATAATGTTGTTCAAGAAATGCTTAAACTTGGTGTCGTGGCTAAGCTTTGTTTGGTTCTTCAAGTTGATTGTGGAAGTAAGACTAAGGAGAAAGCAAGAGAGATACTTAAGATGCATGCTAGGGCATGGAGGAATTCTCCATGCATACCTAGTAATTTGCTTTCTTCATACCCTAATTACGAGTGA 1263 0.3745 MDHDEIEVPSFFVCPISLEIMKDPVTVSTGITYDRESIEKWLFAKKNMTCPVTKQQLSDYTDLTPNHTLRRLIQAWCTLNASQGIERIPTPKPPINKTQITKLIKEASHSSLTVQLKCLKRLRSMASGSETNKRCIEDAGAVEFIASIVINNSCNIDFVNNSGSLSETNTVDEALSILHNLHVSEAGLKKLLAFRNGEFIESLTKVMQKGFFESRAYAVFLLKSMSEVAEPVQLLHQKIELFIELVQVLKDQISQKVSKAALQILIALCPWGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLILLENLCQCAEGRAELLRHAAGLAVVSKKILRVSTVANDRAVRILLSVSRFSATHNVVQEMLKLGVVAKLCLVLQVDCGSKTKEKAREILKMHARAWRNSPCIPSNLLSSYPNYE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03591 420 Pfam U-box domain 8 78 IPR003613 GO:0004842|GO:0016567
Mepo3g03591 420 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Mepo3g03591 420 PANTHER WDSAM1 PROTEIN 4 409 IPR045185 GO:0061630
Mepo3g03591 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Mepo3g03591 420 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Mepo3g03591 420 SUPERFAMILY ARM repeat 99 397 IPR016024 -
Mepo3g03591 420 CDD RING-Ubox_PUB 9 59 IPR045210 -
Mepo3g03591 420 Gene3D - 95 407 IPR011989 -
Mepo3g03591 420 FunFam RING-type E3 ubiquitin transferase 1 86 - -
Mepo3g03591 420 SUPERFAMILY RING/U-box 4 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03591 Mepo-Chr3 45683908 45685564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03591 1 417 U-box Gene Family AT3G52450 59.132 3.46e-180 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03591 - - mtr:25499491 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03591 3 45683908 45685564 Mepo3g03591 3 45683908 45685564 ECH
Mepo3g03591 3 45683908 45685564 Mepo4g02260 4 30437414 30438739 PCT
Mepo4g02259 4 30417132 30418705 Mepo3g03591 3 45683908 45685564 PCT