Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03543 ATGTCAATAAACCAAAAAATACAAGAAACAACATCACTATGGTGGAATCAACAACAACAACAAAGAACTCAACAAGATGCAGAAGAAGCTGAACTAGAAGATGATGTGGTTTTAGAATCAATAATGAAACTAAAAACAACAGAAGCATCATCAGAAGAAGAGAAAGAAGCGATGTTTGAGAAACCATTAACACCAAGCGATGTAGGGAAGTTGAACCGACTAGTTATTCCAAAACAACATGCTGAAAGATATTTCCCACTAGACTCAGAAGAAATCAAAGGTTTGTTACTGAGTTTTGAGGATGAGTCAGGTAAGTGTTGGAGGTTCCGTTATTCATATTGGAACAGTAGTCAAAGCTATGTTCTTACAAAAGGTTGGAGTCGTTATGTTAAAGATAAACGTCTTGATGCTGGTGATGTTGTTTTGTTTCAAAGACACCGTATACATCCTCAACGGTTGTTTATCTCATGGAGGCGCCGCCATGGTAGTAACTCTACTCCACCGGCTCATGTTAGCAGATCCAGTTCTGACGGCAATGGGAATAGCACTGTTCCTTTGGGGTGGTCCAGAGAACTTTATCCTGCGCATCCTTATCCTACTCATCATCATCCCTTGTCATACCATGCAGGTGAAGGGTCCCAAAATCAGAACACAACCACACCTTGTGGAAATAGTTCGAGTACTTCCAGGGTGCTGAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATAATATTAATATTAACAATATTAATGATTCTCAAACTTTGTCACAAGATTGCTCTTATAATATGTCATCAACACAAGGCACAGCTATCCCACAATTCTACCATCACCTCCACCGTCAACCTCCTTCAAATCCTCACCATCACATGCTACGTCAACAACCATATTAG 900 0.4011 MSINQKIQETTSLWWNQQQQQRTQQDAEEAELEDDVVLESIMKLKTTEASSEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEEIKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRIHPQRLFISWRRRHGSNSTPPAHVSRSSSDGNGNSTVPLGWSRELYPAHPYPTHHHPLSYHAGEGSQNQNTTTPCGNSSSTSRVLRLFGVNMECQPDNNININNINDSQTLSQDCSYNMSSTQGTAIPQFYHHLHRQPPSNPHHHMLRQQPY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03543 299 MobiDBLite consensus disorder prediction 199 227 - -
Mepo3g03543 299 MobiDBLite consensus disorder prediction 209 227 - -
Mepo3g03543 299 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 25 257 IPR044800 GO:0003700
Mepo3g03543 299 MobiDBLite consensus disorder prediction 159 186 - -
Mepo3g03543 299 SUPERFAMILY DNA-binding pseudobarrel domain 56 161 IPR015300 -
Mepo3g03543 299 CDD B3_DNA 58 147 IPR003340 GO:0003677
Mepo3g03543 299 ProSiteProfiles B3 DNA-binding domain profile. 59 161 IPR003340 GO:0003677
Mepo3g03543 299 FunFam B3 domain-containing protein 52 170 - -
Mepo3g03543 299 Gene3D - 47 170 IPR015300 -
Mepo3g03543 299 SMART B3_2 59 161 IPR003340 GO:0003677
Mepo3g03543 299 Pfam B3 DNA binding domain 59 160 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03543 Mepo-Chr3 45237207 45239262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03543 52 258 RAV Transcription Factor Family AT5G06250 51.802 6.93e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g03543 B3 5e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03543 K09287 - gmx:100818164 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03543 3 45237207 45239262 Mepo3g03543 3 45237207 45239262 ECH
Mepo3g03543 3 45237207 45239262 Mepo4g02334 4 31347372 31349798 PCT