Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03539 ATGGCGTCGATCACAAAAATAGTCGGCTACAATAATACCCGTAGAGTTATTGCTTCTCCCTTCCTTCTCACTTTCCGCAGGGCTATTGCTTTCAAGCTTTTCGTTGGAGGACTTTCCTTTCACACAACAGAGAAAACATTGTCAGATGCATTCTCAAATCATGGACAAGTTGTTGAAGCTAAAGTTATAACAGATAGGATTTCAGAGAAATCTAAAGGGTATGGTTTTGTTACTTTTGCTTCGCAAGATGAAGCTGAGAAGGCCATAACAGAGATGAATGAAAAGGCACTAAACGGACGTGTTATCTTTGTTGATTACGCAAAACCAGATACTAAACGCAGCATGGGAATGCCGATTGCCAGAGGGCCTCCTGAAGATCTGAACAAACAACAAACAGTGGATTCTCCTCAAGACGCGTGA 420 0.419 MASITKIVGYNNTRRVIASPFLLTFRRAIAFKLFVGGLSFHTTEKTLSDAFSNHGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEMNEKALNGRVIFVDYAKPDTKRSMGMPIARGPPEDLNKQQTVDSPQDA 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03539 139 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 30 116 - -
Mepo3g03539 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 102 IPR000504 GO:0003723
Mepo3g03539 139 MobiDBLite consensus disorder prediction 115 139 - -
Mepo3g03539 139 SMART rrm1_1 32 105 IPR000504 GO:0003723
Mepo3g03539 139 Gene3D - 27 134 IPR012677 -
Mepo3g03539 139 SUPERFAMILY RNA-binding domain, RBD 31 122 IPR035979 GO:0003676
Mepo3g03539 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03539 Mepo-Chr3 45198981 45201043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03539 33 123 Eukaryotic Initiation Factors Gene Family AT1G49760 35.922 5.48e-09 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03539 3 45198981 45201043 Mepo3g03539 3 45198981 45201043 ECH