Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03519 ATGCCCGGGACAAGACAAAAAGATGCAATGGCCCGAAATCCAGAGTCACCAGGGGGAAACAGTGAACCTGAAAAACCCACAGATTCTGGTGAGCAGGTAGATCTTGATGGGGACAATGATCAAGAGGAATCAAGCGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGTGGAGGAAGAAGTGGAAGAGGAGGAAGAAGAGGAGGAAGAAGAGGAAGAAGTAGAGGAAGAAGTAGAGGAAGAGAGTAAGCCCTTAGATGAAGAAGATGAGGCTGACAAAAAGAAACACGCTGAGCTTCTTGCGCTTCCACCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCATGAAACTTCTGAAAAAGATTTAAGGGTCTTTTGTCAATCTGTGGGAGAAGTGGCAGAGGTAAGGGTTATGAAGGGGAAAGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTAGCATCTAAGGCTCTCGAGGAGTTGAACAACTCTGAATTCAAGGGAAGAAAAATAAAGTGCTCACCATCTCAAGTTAAGCATCGGTTATTCATTGGTAATGTTCCTAAAGAGTGGACTGTAGAAGATATGAAGAAGGTTGTTGCCAAGGTTGGCCCTGGAGTCATTTCGGTGGAACTGTTGAAGGATCCACAGAGTTCTAGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAACCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACTCAAACTTTAAACTTGACAATAACGATGCAATAGTGAGCTGGGCTGACCCAAGGAATTCTGAATCATCATCATCCGCTCAGGTGAAAGCAGTATACGTAAAGAACCTTCCAGAAAACATAACTCAGAATCGTCTTAAAGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGCTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGCAGATATGGTTTTGTTCACTTTGCTGATAGGTCAAGTGCAATGAAGGCATTGAAGAATACGGAGAAGTATGAAATTGATGGTCAAACTTTGGAATGCTCACTTGCTAAGCCACAAGCAGATCAGAAGTCATCTGGTGCATCAAATTCATTCAACTCTGCTGTACTTCCTGTGTATCCATCTCCTCTTGGTTATGGTATGGTTGGAGGTGGATATGGTGCTGTTGGTGCAGGATATGGTGCTGCTGGCTTTGCATCGCCACTGATGTATGGTCCGGGAGCAACTCCTGCTGGCATGACAATGATGCCAATGCTTTTACCGGATGGAAGGATTGCATATGTATTGCAACAGCCAGGTTTGCAACAGCCAGGTTTTCAACAGCATGCTCCATCACCAGTATCCCGGCATGGTAGGAGTAGTGGTGTCAGCTCAAGTGGTGAAAAACGCAGTAACGATAATAACCGTAATCGTGGTCATGGCCGATATAATCCTTACTAA 1449 0.4417 MPGTRQKDAMARNPESPGGNSEPEKPTDSGEQVDLDGDNDQEESSEEEVEYEEVEVEEEVEEEEEEEEEEEEVEEEVEEESKPLDEEDEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAKGYAFVTFKTKELASKALEELNNSEFKGRKIKCSPSQVKHRLFIGNVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSAQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGASNSFNSAVLPVYPSPLGYGMVGGGYGAVGAGYGAAGFASPLMYGPGATPAGMTMMPMLLPDGRIAYVLQQPGLQQPGFQQHAPSPVSRHGRSSGVSSSGEKRSNDNNRNRGHGRYNPY 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03519 482 SMART rrm2_1 107 177 IPR003954 GO:0003676
Mepo3g03519 482 SUPERFAMILY RNA-binding domain, RBD 272 362 IPR035979 GO:0003676
Mepo3g03519 482 MobiDBLite consensus disorder prediction 438 466 - -
Mepo3g03519 482 Gene3D - 267 397 IPR012677 -
Mepo3g03519 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 355 IPR000504 GO:0003723
Mepo3g03519 482 SUPERFAMILY RNA-binding domain, RBD 103 265 IPR035979 GO:0003676
Mepo3g03519 482 Coils Coil 44 81 - -
Mepo3g03519 482 Gene3D - 31 183 IPR012677 -
Mepo3g03519 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 252 IPR000504 GO:0003723
Mepo3g03519 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 IPR000504 GO:0003723
Mepo3g03519 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 348 IPR000504 GO:0003723
Mepo3g03519 482 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 20 473 - -
Mepo3g03519 482 CDD RRM_SF 108 177 - -
Mepo3g03519 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 265 IPR000504 GO:0003723
Mepo3g03519 482 MobiDBLite consensus disorder prediction 438 482 - -
Mepo3g03519 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 181 IPR000504 GO:0003723
Mepo3g03519 482 MobiDBLite consensus disorder prediction 33 85 - -
Mepo3g03519 482 MobiDBLite consensus disorder prediction 1 92 - -
Mepo3g03519 482 Gene3D - 184 264 IPR012677 -
Mepo3g03519 482 SMART rrm1_1 278 351 IPR000504 GO:0003723
Mepo3g03519 482 SMART rrm1_1 184 261 IPR000504 GO:0003723
Mepo3g03519 482 SMART rrm1_1 107 177 IPR000504 GO:0003723
Mepo3g03519 482 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 266 375 - -
Mepo3g03519 482 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 184 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03519 Mepo-Chr3 45013311 45017493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03519 108 360 Eukaryotic Initiation Factors Gene Family AT4G34110 23.132 4.26e-14 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03519 3 45013311 45017493 Mepo3g03519 3 45013311 45017493 ECH