Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03501 ATGGAGAGATTGGAATTGAAAGAAGTTCAGAAACTGGAAGGTCATACCGATAGGGTTTGGAGTTTGGATTGGAACCCTGCTACCGGTCATGCCGGTATTCCCCTCGTCTTCGCTTCTTGCAGCGGCGATAAAACTGTTCGAATCTGGGAACAAAACCTCTCCACTAACCTTTTCTCCTGCAAGGCGACTTTGGAAGAAACACACACTCGAACTGTTCGATCTTGTGCTTGGTCACCGTCTGGAAAATTGTTAGCCACTGCAAGCTTTGATGCCACCACTGCCATATGGGAAAATGTTGGGGGTGAATTTGAGTGTGTCTCTACTTTGGAGGGACATGAAAATGAAGTCAAGAGTGTATCTTGGAATGCATCGGGAACTTTGCTTGCAACTTGTAGTAGAGATAAGTCTGTTTGGATATGGGAAGTGCAGCCAGGCAATGAGTTTGAGTGTGTTTCAGTGCTGCAAGGACATACCCAGGATGTGAAAATGGTGAGGTGGCACCCAACGGAGGATATATTATTTTCATGTAGCTATGATAATAATATTAAGGTTTGGGCAGATGAAGGTGACAGTGACGATTGGCAGTGTGTTCAAACTCTTGGAGAACCCAACAATGGTCATACATCTACTGTTTGGGCCCTCTCCTTTAATGCTAGTGGAGACAAAATGGTTACATGTAGCGATGATCTTACCCTGAGGGTATGGGAAACAGAACATGTAGGCATGCAATCTGGTGGTGGATTTGCACCTTGGAGACATGTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTTTCAGTTCATTGGTCAAGGGGAGGTATCTTTGCCAGTGGAGCTGCCGATGATGCTATACGACTTTTTGTGGAGAACAATGAAAGTCAGGTCGACGGTCCTTTGTACAAGTTGCTACTGAAGAAGGAGAAAGCTCATGACATGGATATAAATTATGTGCAGTGGAGCCATGGGGAGAAGCCACTGCTAGCCTCTGCAAGCGATGATGGGACAATCAAGGTGTGGGATCTGGTATCATAG 1035 0.4541 MERLELKEVQKLEGHTDRVWSLDWNPATGHAGIPLVFASCSGDKTVRIWEQNLSTNLFSCKATLEETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGEFECVSTLEGHENEVKSVSWNASGTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVRWHPTEDILFSCSYDNNIKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNASGDKMVTCSDDLTLRVWETEHVGMQSGGGFAPWRHVCTLTGYHDRTIFSVHWSRGGIFASGAADDAIRLFVENNESQVDGPLYKLLLKKEKAHDMDINYVQWSHGEKPLLASASDDGTIKVWDLVS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 238 - -
Mepo3g03501 344 Gene3D - 35 344 IPR015943 GO:0005515
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 185 IPR001680 GO:0005515
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 150 IPR001680 GO:0005515
Mepo3g03501 344 PANTHER WD40 PROTEIN CIAO1 6 342 IPR028608 GO:0016226|GO:0097361
Mepo3g03501 344 CDD WD40 8 341 - -
Mepo3g03501 344 SUPERFAMILY WD40 repeat-like 4 341 IPR036322 GO:0005515
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 50 IPR001680 GO:0005515
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 143 - -
Mepo3g03501 344 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Mepo3g03501 344 Pfam WD domain, G-beta repeat 149 185 IPR001680 GO:0005515
Mepo3g03501 344 Pfam WD domain, G-beta repeat 194 235 IPR001680 GO:0005515
Mepo3g03501 344 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Mepo3g03501 344 Pfam WD domain, G-beta repeat 60 96 IPR001680 GO:0005515
Mepo3g03501 344 Pfam WD domain, G-beta repeat 310 341 IPR001680 GO:0005515
Mepo3g03501 344 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 97 IPR001680 GO:0005515
Mepo3g03501 344 ProSitePatterns Trp-Asp (WD) repeats signature. 128 142 IPR019775 -
Mepo3g03501 344 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 344 IPR001680 GO:0005515
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 185 - -
Mepo3g03501 344 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 4 344 - -
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 65 97 - -
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 238 IPR001680 GO:0005515
Mepo3g03501 344 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Mepo3g03501 344 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Mepo3g03501 344 PRINTS G protein beta WD-40 repeat signature 128 142 IPR020472 -
Mepo3g03501 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 344 - -
Mepo3g03501 344 SMART WD40_4 193 236 IPR001680 GO:0005515
Mepo3g03501 344 SMART WD40_4 102 141 IPR001680 GO:0005515
Mepo3g03501 344 SMART WD40_4 5 50 IPR001680 GO:0005515
Mepo3g03501 344 SMART WD40_4 301 341 IPR001680 GO:0005515
Mepo3g03501 344 SMART WD40_4 57 97 IPR001680 GO:0005515
Mepo3g03501 344 SMART WD40_4 147 186 IPR001680 GO:0005515
Mepo3g03501 344 SMART WD40_4 250 289 IPR001680 GO:0005515
Mepo3g03501 344 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 4 344 IPR028608 GO:0016226|GO:0097361
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03501 80 287 U-box Gene Family AT2G33340 26.316 6.90e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03501 K24730 - gmx:100778826 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03501 3 44913052 44919505 Mepo3g03501 3 44913052 44919505 ECH