Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03451 ATGAACATGGAAAACTCTCGTAGATCTTTAGATAGATCGAGAGAACCAGGTGCCAAGAAACCTCGATTGATCGATGAGCTACAACAAGGTTCCAATCCAACTTCACGAACGTTTCCTCAACGACAACAACCTACCTCTGGGGTTGCTTCGATGTTGTCGTCTGGTAGGTTTCGAATGAACGATAGAGACTCTGAAAGTAGTGATGGTGGCGGTGGTTACCACCCTCAACCACCGCCGCATCAAGAGCTGGTGACTCAGTATAAGGCTGCTCTTGCTGAGCTTACTTTTAACTCGAAACCGATAATTACTAATTTGACTATAATTGCTGGGGAGAATCTTTCTGCGGCTAAATCGATTGCTGGTGCTGTTTGTGGTAACATTCTTGAGGTTCCAAGTGACCAAAAGCTGCCATCGCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTCGCTGTCAGACTACCTGAGGTATTCTGCAATACATACAGACAGGTTGATACTCCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTCTTTCCTCCTCAGACTCTTCAGATAATTGAGAAGGAACTCAACTTCAATCCCGCGGTCAATGGTTCAGCTTCTGCATCTGCTACCCTTAGAAGTGATTCTCAGTCTCAACGCCCATCTCATAGCATCCATGTGAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTATTTGATGATATGGCTGGAGTTATTTCAAATGCAAATGAAGGCGCAGAGAGGCCAGATCGAGCTTTGGGTGCTGCACGTCCATGGCTGGATCCTAGGCTTAATATGCTTAATAACCAGCATACTCATAGAGGTGCACTTAATGACTCTGTTCCTGAAAAGAGCATCGGCGGAGCTTATGGAGACGATGAATATAATTCTAGTGTTTCAAATAGTTTGGGTTCAGGTGTTGGAAGAACCGGAAGTAGGCTCATTGGCGGTGTTGCAGAGACCTTATCTGGGCAAAGAAATGGTTTCAGCCTCAAACATAGTTTTTCAAATCATGAAGCACCGAAGTCTGTGAATTTGGATGCACATAGCATAAGGAGCAGTGCAATGTCAAAGAACTGGAAAAATTCGGAGGAAGAGGAGTTCATGTGGGATGAGGTGAACCCTGGTTTGTCTGATAATGTACCTAATGCCTCCAACAACTTGAGCTCAGACCCATGGATGGCCAATGATGACAATTTGGAAAGTGAAGATCACCTCCAAATCACACACCCAATTGGAACAAAGGTTAATAAAGGAATATCCACTGTTAAGAAACAACTATCATCATCTGGGGGGCATTCATCATTATCATGGGAGTTGCAGAATCAGGTCCCAAGTGCCAAATTGAATATGAAGCCAGGTCACTCAGAAATATTTGTTTCTGCTCCTAGTGGCTTACCCAAGAATTCAAATTCTTCGGCTGCGAGGATAAGAAATCAGTCTTCTATGCCGCATACAACAATAGGAATGTCCAAAATTACGGGACAGCAGCAATTTGATTCTGAGGGGACCGAGTCCCCTTCGGAACAGTCTTCACCTTTGCGACAACAGTCTCCATCAGTGCCAGTAACAATACGCAACCCTCCTTCAATGCGAAATTTGGCTGAGCAAGATTGTCCAACAACTCTTAAAATATCTCAACATTTGGGTGGTCTGCAAAGTCAATATATTAGAGATCCCGTGCCTGCTATTCGTTCCAATGTTCAGGTTGGTAACTTGCGAAAATCACAAGAGAAGGACATGCGGGGTCCGTTATCTTCAGCAACTTCTTTTCAGCCAAAACCTCAGCAACAGCAGCTGGGTTCTTCACAGGCTGAAGTTACTCTTAAAGCTAAGCAGCCACTCAAATCTAAAGCTCCTTTAGTCAAAGCCAAAGTAACTTCAGAAAAGTCAACCACAAAGTGTCTTCCAGCTCCATCTGTGAAGAGTGGAATCATCCCCAATAAATCAATTTCCAGTAGTCTGGATGCAAGTAATCGTCCATCTCAAATAGGGGTTAAGCCTACTCGGTCAGGTGGTCCTTCCCCGACCACACTAATTTCTTCGGGGTCTCCCGCCGTGTCACTAGGTTCTCCAAATGATTATTCACCTGCTCTGCCAAAACTACTGCAAGGGAAGGCTGGAAAGAAGCAAAAGGATTCTACTCAACCATCTACTTCCTCCAACAATCGCGGTGCATCAGCTCCAAGCTCAAATACCGCCAATAAGAATACCTTGAATCCAATTTCAAATCTTTTAAGCTCGTTAGTTGCGAAAGGTTTGATATCCGCAGGAACAGAGTCAGCAACTACAGTGCCAAGTGAGATGGTGATGCGATCGAAAGACCAAACTGAAAGCATTGCTGTCAGTTCCTCTTTACCAGTTGCTTCAGTTCCTGTTTCTTCAGCTGTCCCAGTAAAATCTTCCAGAATTGAGGCAGATGATGCTGCAAAGGCCTCGCTTGCCTTGTCTCAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTGATTTCAAACCTGATGTAATTCGAGAAATGCACCCACATGTAATCGAAGAATTATTGGAGGAACTCCCACATCATTGCGGTGATTGTGGTATTAGGCTTAAACAACAAGAACAGTTTAATAGACACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAATGGTCTGATTGTAGCATCAAGAAGATGGTATGCAACGTCAGATGACTGGATTGCTGGCAAGGCAGAATGTCTATCAGAGTCTGAGTTTACTGATTCTGTAGATGAATATGATGAAACAGACGGGAGTCAATTGGACACTATGGTTGTTGCAGATGAAAACCAATGCTTGTGTGTTTTGTGTGGCGAGCTATTTGAAGATGTATACTGTCAGGAAAGGGACGAGTGGATGTTCAAGGGGGTTGTATACCTGAACAATCCAGATAGCTATAGCGAGATGGAAAGTAGAAATATGGGGCCCATCATTCATGCTAGATGCTTGTCAGATAACTCAATACTTGGTGTGACTAATACAGAACATGATTGA 3081 0.4349 MNMENSRRSLDRSREPGAKKPRLIDELQQGSNPTSRTFPQRQQPTSGVASMLSSGRFRMNDRDSESSDGGGGYHPQPPPHQELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCGNILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCNTYRQVDTPVHSSMRHLFGTWRGVFPPQTLQIIEKELNFNPAVNGSASASATLRSDSQSQRPSHSIHVNPKYLERQRLQQSSRTKGVFDDMAGVISNANEGAERPDRALGAARPWLDPRLNMLNNQHTHRGALNDSVPEKSIGGAYGDDEYNSSVSNSLGSGVGRTGSRLIGGVAETLSGQRNGFSLKHSFSNHEAPKSVNLDAHSIRSSAMSKNWKNSEEEEFMWDEVNPGLSDNVPNASNNLSSDPWMANDDNLESEDHLQITHPIGTKVNKGISTVKKQLSSSGGHSSLSWELQNQVPSAKLNMKPGHSEIFVSAPSGLPKNSNSSAARIRNQSSMPHTTIGMSKITGQQQFDSEGTESPSEQSSPLRQQSPSVPVTIRNPPSMRNLAEQDCPTTLKISQHLGGLQSQYIRDPVPAIRSNVQVGNLRKSQEKDMRGPLSSATSFQPKPQQQQLGSSQAEVTLKAKQPLKSKAPLVKAKVTSEKSTTKCLPAPSVKSGIIPNKSISSSLDASNRPSQIGVKPTRSGGPSPTTLISSGSPAVSLGSPNDYSPALPKLLQGKAGKKQKDSTQPSTSSNNRGASAPSSNTANKNTLNPISNLLSSLVAKGLISAGTESATTVPSEMVMRSKDQTESIAVSSSLPVASVPVSSAVPVKSSRIEADDAAKASLALSQSTSTEIRNLIGFDFKPDVIREMHPHVIEELLEELPHHCGDCGIRLKQQEQFNRHLEWHATKEREQNGLIVASRRWYATSDDWIAGKAECLSESEFTDSVDEYDETDGSQLDTMVVADENQCLCVLCGELFEDVYCQERDEWMFKGVVYLNNPDSYSEMESRNMGPIIHARCLSDNSILGVTNTEHD 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03451 1026 Gene3D - 76 204 IPR008942 -
Mepo3g03451 1026 MobiDBLite consensus disorder prediction 731 761 - -
Mepo3g03451 1026 MobiDBLite consensus disorder prediction 1 22 - -
Mepo3g03451 1026 FunFam polyadenylation and cleavage factor homolog 4 76 204 - -
Mepo3g03451 1026 Pfam CID domain 88 197 IPR006569 -
Mepo3g03451 1026 SUPERFAMILY ENTH/VHS domain 79 203 IPR008942 -
Mepo3g03451 1026 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 54 1015 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Mepo3g03451 1026 MobiDBLite consensus disorder prediction 27 53 - -
Mepo3g03451 1026 MobiDBLite consensus disorder prediction 667 713 - -
Mepo3g03451 1026 ProSitePatterns Zinc finger C2H2 type domain signature. 878 898 IPR013087 -
Mepo3g03451 1026 MobiDBLite consensus disorder prediction 214 251 - -
Mepo3g03451 1026 ProSiteProfiles CID domain profile. 79 207 IPR006569 -
Mepo3g03451 1026 CDD CID_Pcf11 84 204 IPR047415 -
Mepo3g03451 1026 MobiDBLite consensus disorder prediction 1 80 - -
Mepo3g03451 1026 MobiDBLite consensus disorder prediction 485 557 - -
Mepo3g03451 1026 MobiDBLite consensus disorder prediction 591 761 - -
Mepo3g03451 1026 MobiDBLite consensus disorder prediction 214 232 - -
Mepo3g03451 1026 SMART 558neu5 82 204 IPR006569 -
Mepo3g03451 1026 MobiDBLite consensus disorder prediction 483 557 - -
Mepo3g03451 1026 MobiDBLite consensus disorder prediction 604 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03451 Mepo-Chr3 44451746 44458312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03451 21 399 C2H2 Transcription Factor Family AT4G04885 37.093 3.39e-58 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g03451 CID 1.5e-11 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03451 3 44451746 44458312 Mepo3g03451 3 44451746 44458312 ECH
Mepo3g03451 3 44451746 44458312 Mepo4g02427 4 32443007 32449412 PCT