Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03430 ATGGAAATGAGTCAACCGTCATTGGGTGAGACACCACAAAGGTTACTTCCAGCTATGGATGAAATGAACATCGATGGAAACAATTACAGAGAGAAGAAGAAAAGATTAACAAGTAACCAGATTGATTCACTGGAGAAGAGTTTCCAAGAAGAAATAAAGCTAGACCCTGAAAGGAAGATGAAGCTTTCAAAAGAGCTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAGGCTAAGCAGCTTGAACACTTGTATGATGTTCTCAAACAAGAATTTGATGTTGTTTCCAAGGAAAAACAGAAACTTCAAGAAGAGGTTATGAAGTTAAAGGGAAAGCTAAAAGAGCAATCAGGTGGTAATTTTAGGACACAAACATATGTTGAAGAAACAGTAGAAAGCACATCAGAAGGTCTACGTTGTTCTAACAAACCAACAAGTAGTAGCATTCAACAAGCTGTTCCAGATCAGGGATACAACAATAACAACAACAGTACCACTTTCATTGTTGAAGATTTTAATAACTCAGTTTCAATGCCTCCTAATCAATGTCACTGGCCTGTATTGCCTAATTATTATCCCTAA 606 0.3795 MEMSQPSLGETPQRLLPAMDEMNIDGNNYREKKKRLTSNQIDSLEKSFQEEIKLDPERKMKLSKELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKQEFDVVSKEKQKLQEEVMKLKGKLKEQSGGNFRTQTYVEETVESTSEGLRCSNKPTSSSIQQAVPDQGYNNNNNSTTFIVEDFNNSVSMPPNQCHWPVLPNYYP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03430 201 MobiDBLite consensus disorder prediction 145 168 - -
Mepo3g03430 201 FunFam Putative homeobox-leucine zipper protein ATHB-51 29 92 - -
Mepo3g03430 201 Pfam Homeobox associated leucine zipper 87 121 IPR003106 GO:0006355|GO:0043565
Mepo3g03430 201 Gene3D - 29 91 - -
Mepo3g03430 201 Pfam Homeodomain 30 85 IPR001356 GO:0003677
Mepo3g03430 201 Coils Coil 86 127 - -
Mepo3g03430 201 PRINTS Lambda-repressor HTH signature 58 67 IPR000047 GO:0003677
Mepo3g03430 201 PRINTS Lambda-repressor HTH signature 67 83 IPR000047 GO:0003677
Mepo3g03430 201 SUPERFAMILY Homeodomain-like 15 89 IPR009057 -
Mepo3g03430 201 CDD homeodomain 30 88 IPR001356 GO:0003677
Mepo3g03430 201 ProSitePatterns 'Homeobox' domain signature. 62 85 IPR017970 GO:0000981|GO:0006355
Mepo3g03430 201 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 27 159 IPR045224 GO:0003700
Mepo3g03430 201 SMART HOX_1 30 91 IPR001356 GO:0003677
Mepo3g03430 201 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03430 Mepo-Chr3 44287823 44289272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03430 25 117 Homeobox Transcription Factor Family AT5G03790 74.194 3.06e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo3g03430 Homeodomain 3.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03430 - - ccaj:109798071 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03430 3 44287823 44289272 Mepo3g03430 3 44287823 44289272 ECH
Mepo4g02450 4 32707172 32709125 Mepo3g03430 3 44287823 44289272 PCT