Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03384 ATGCAACAACATCTCCAGTTAGTGTTATACACAACTAAAGGGTCTTCAATGGCTGTACATGCGTTAAAAATTGTCTTTATATTTTGCAGATATTCATGCCCTGTTTGCTCGAAATCATTCTGTGACATGTCGCGTGTGTGGGAGAAAATGGATGAGGAGGTTGCATCAATACCTATGCCTGAAATGTATCGAAACAAAATGGTTTGGATTCTATGTAACGACTGCGGAGAAACATCTGAAGTAAGATTTCATGTTGTGGCTCACAAATGCCTTAGTTGCAAGTCATACAACACCAGAGAGACACAAGCTCCGTCGTGCTTGTCAAGGATGGAAGTGATGGTTAGATGA 348 0.408 MQQHLQLVLYTTKGSSMAVHALKIVFIFCRYSCPVCSKSFCDMSRVWEKMDEEVASIPMPEMYRNKMVWILCNDCGETSEVRFHVVAHKCLSCKSYNTRETQAPSCLSRMEVMVR 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03384 115 FunFam RING finger and CHY zinc finger domain-containing protein 1 65 109 - -
Mepo3g03384 115 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 27 104 - -
Mepo3g03384 115 Pfam Zinc-ribbon 41 99 IPR039512 -
Mepo3g03384 115 Gene3D - 65 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03384 Mepo-Chr3 43904819 43906668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03384 31 106 C2H2 Transcription Factor Family AT3G18290 46.250 5.20e-18 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g03384 zinc_ribbon_6 2.8e-27 No_clan