Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03380 ATGTTCCAAACAATATGCATATTGCTAATCATATCTGTTCTAAGTTCATTTTCAAAACTTGGAACAGCAATGCTGAACTTAACTCTTCCTGGAACGCACCCTGACCCTGATGCTGTTGCCCACGAAGTTCATAGGAAGGTGAATGCTTCAATTGCAAGAAGGGAAATGCTATCTGGATCTGCATGCATGACTGGTAACCCGATTGACGATTGTTGGAAATGCGACCCAGAATGGCCCAACAATCGTCAAAGGTTAGCTGATTGTGCAATTGGGTTTGGTCAGTATGCTAAAGGAGGAAAAGGTGGTGAATTTTACGTTGTAACAGATTCCTCAGATGATGATGCTGTTACCCCAAAACCAGGTACATTAAGATATGGTGTGATAAAAAATGAACCATTGTGGATAGTGTTCCCTAGTAACATGATGATTAAGCTGAAGCAAGAGCTTATATTTAATAGTTATAAGACTATTGATGGACGTGGAGCTGATGTTCACGTTGTGGGAGGAGGATGCATTACTTTGCAGTTTATTAGTAATGTTATCATACATAACATTCATATTCACCATTGTCACCCCTCAGGGAACACAAATGTGAGATCAAGTCCTGAACACTTTGGCTACAGAACAATGTCAGATGGAGATGGAATATCCATATTCGGTTCAAAAGACATATGGGTCGACCATTGCACACTCTCACATTGCAAAGACGGACTAATAGACGCAGTAATGGGATCAACAGGAATAACGATATCCAACAACTTCATGTCACACCACAATGAAGTCATGCTTCTTGGACACAGCGATGACTACCTCCCAGACTCAGGAATGCAAGTCACAATCGCATTCAACCATTTTGGCGAGAAACTTGTTCAAAGGATGCCACGATGCAGAAGAGGATACATCCATGTGGTCAACAATGATTTCACTGAGTGGGAAATGTATGCCATTGGTGGGAGTGGTGAACCAACTATCAACAGTCAAGGGAACCGTTACTTTGCGCCGATTAATCCTTTTGCTAAAGAGGTTACTAAGAGGGTTGAAACTGAGCAAAATAAGTGGAAAGGGTGGAATTGGAGGTCTGAGGGCGATGTTATGGTTAATGGTGCATTTTTTGTTACATCTGGTGACACTCTAGAGGTTAAGTATGAGAAGGCTTATAGTGTTGAACCTCAGTCTGCTGATCGGATTGTTCTTCTTACCATGAACTCTGGTGTTCTTGGTAATGCAAGAGACAATAACTTGGGAATGTGGAGCAGAGGACCAAGCAGCAACAATGACGGCGTTTTAGATTCTGGCCCGGATTACACAGATGATATGTCAGGAAGTGCGCGAGTGTTGTTGTCTTCTTTTACTATGGTGATGTGCTTCTTGTTGTCTTATAGAGTGCTACCATTAAGAATTATTCAATGA 1410 0.417 MFQTICILLIISVLSSFSKLGTAMLNLTLPGTHPDPDAVAHEVHRKVNASIARREMLSGSACMTGNPIDDCWKCDPEWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDDDAVTPKPGTLRYGVIKNEPLWIVFPSNMMIKLKQELIFNSYKTIDGRGADVHVVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHFGYRTMSDGDGISIFGSKDIWVDHCTLSHCKDGLIDAVMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYFAPINPFAKEVTKRVETEQNKWKGWNWRSEGDVMVNGAFFVTSGDTLEVKYEKAYSVEPQSADRIVLLTMNSGVLGNARDNNLGMWSRGPSSNNDGVLDSGPDYTDDMSGSARVLLSSFTMVMCFLLSYRVLPLRIIQ 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03380 469 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Mepo3g03380 469 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Mepo3g03380 469 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Mepo3g03380 469 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Mepo3g03380 469 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Mepo3g03380 469 PRINTS Pollen allergen Amb family signature 385 408 IPR018082 -
Mepo3g03380 469 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Mepo3g03380 469 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Mepo3g03380 469 SUPERFAMILY Pectin lyase-like 61 397 IPR011050 -
Mepo3g03380 469 Gene3D - 65 407 IPR012334 -
Mepo3g03380 469 SMART amb_all 140 337 IPR002022 -
Mepo3g03380 469 PANTHER PECTATE LYASE 18-RELATED 31 408 IPR045032 GO:0030570
Mepo3g03380 469 FunFam Pectate lyase 65 407 - -
Mepo3g03380 469 Pfam Pectate lyase 146 325 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03380 Mepo-Chr3 43877541 43881399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03380 1 459 Polysaccharide Lyase AT3G53190 74.518 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03380 K01728 - gmx:100775595 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03380 3 43877541 43881399 Mepo3g03380 3 43877541 43881399 ECH
Mepo3g03380 3 43877541 43881399 Mepo4g02508 4 33494843 33499752 PCT