Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03353 ATGGCGAATCAACCTGAATCCTCCGATGCTAAGGGAACAACAAAAAGAGACTTCAGCACTGCTATTCTCGAACGCAAAAAAGCCCTAAATCGTCTGGTTGTTGATGAAGCTGTTAACGATGACAACTCCGTCGTCGCTCTTCATCCTGAGACTATGGAAAAGCTTCAACTATTCCGCGGTGATACTATCTTGATCAAGGGTAAGAAAAGGAAAGATACTATTTGTATTGCACTCGCTGATGAAACATGTGAAGAGCCAAAAATAAGAATGAACAAGGTTGTGAGGAACAATCTTAGGGTTAGGCTTGGAGATGTTGTTTCGGTGCATCAATGTGCTGATGTCAAATATGGAAAGAGAGTTCACATTCTCCCCGTAGATGATACTATTGAAGGAGTTACTGGAAACCTCTTTGATGCATACTTAAAACGTAACTGTAAATTTTGTGCTGTTTTGATCATCGATTTCTCTAAAATTTCTGCCATTGTCAGTGTTTGTACTTCAATTTCTAGGAGAGGTAGTAGTGTAGGAGATGCTGGGGGTGCTGCGGACAGGGTTTTGAACCAGCTGCTAACAGAAATGGATGGGATGTCAGCAAAGAAAACCGTGTTCATCATTGGCGCAACTAATCGACCGGACATTATAGACCCAGCTCTTCTGCGTCCAGGCCGTCTAGACCAGTTAATTTATATTCCCCTCCCAGATGAAGATTCCCGTCACCAGATATTTAAAGCTTGCTTGAGAAAATCTCCCATCTCTAAAGATGTTGATATTAGAGCTCTTGCAAAGTACACCCAAGGCTTTAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCTTGCAAGTATGCCATAAGAGAGAACATTGAGAAGGACATTGAAAAAGAGAGAAAGAGAAGCGAGAACCCAGAGGCCATGGAAGAGGACATTGAAGATGAAGTAGCTGAAATCAAGGCTGCTCATTTTGAGGAATCGATGAAATACGCGCGAAGGAGTGTAAGTGACGCTGACATTCGCAAGTACCAGGCATTTGCCCAGACATTGCAGCAGTCCAGAGGGTTTGGAACCGAGTTTCGGTTTGCAGATTCTGGTACCAGTGGTGCTGCTGCAGGTGCATCTGATCCATTTACATCTGCTGCTGGAGCTGATGATGACGATCTTTACAATTAG 1167 0.4353 MANQPESSDAKGTTKRDFSTAILERKKALNRLVVDEAVNDDNSVVALHPETMEKLQLFRGDTILIKGKKRKDTICIALADETCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKRNCKFCAVLIIDFSKISAIVSVCTSISRRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERKRSENPEAMEEDIEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFADSGTSGAAAGASDPFTSAAGADDDDLYN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03353 388 Gene3D - 233 326 - -
Mepo3g03353 388 Gene3D - 8 113 - -
Mepo3g03353 388 SUPERFAMILY Cdc48 domain 2-like 113 146 IPR029067 -
Mepo3g03353 388 FunFam Transitional endoplasmic reticulum ATPase 8 113 - -
Mepo3g03353 388 Pfam ATPase family associated with various cellular activities (AAA) 175 232 IPR003959 GO:0005524|GO:0016887
Mepo3g03353 388 SUPERFAMILY ADC-like 30 111 IPR009010 -
Mepo3g03353 388 Gene3D - 114 145 - -
Mepo3g03353 388 MobiDBLite consensus disorder prediction 363 388 - -
Mepo3g03353 388 ProSitePatterns AAA-protein family signature. 202 220 IPR003960 GO:0005524|GO:0016887
Mepo3g03353 388 Pfam AAA+ lid domain 254 295 IPR041569 -
Mepo3g03353 388 Pfam Cell division protein 48 (CDC48), N-terminal domain 31 112 IPR003338 -
Mepo3g03353 388 PANTHER AAA-FAMILY ATPASE 23 138 - -
Mepo3g03353 388 Gene3D - 175 341 IPR027417 -
Mepo3g03353 388 SMART CDC48_N_2 31 114 IPR003338 -
Mepo3g03353 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 345 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03353 Mepo-Chr3 43590292 43594384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03353 152 291 Calmodulin-binding Proteins AT3G56690 44.286 4.88e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03353 K13525 - ini:109163636 386.341