Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03328 ATGGCAAAAGACATTGAAGCCGAACCTCAAGGTGGTGTACCAAACAAGGACTACCATGACCCACCACCAGCTCCACTCTTTGACACTGCCGAACTTGGCCTGTGGTCCTTCTACAGAGCCCTCATCGCTGAGTTCGTCGCCACTCTCCTCTTCCTCTATGTCACTGTTTTAACCGTCATTGGCTACAACGCTCAAACTGATCCAGCTCATAATGGCACCAACTGTGACGGTGTCGGTATTCTCGGCATCGCCTGGGCCTTCGGTGGCATGATTTTCATCCTCGTCTACTGCACTGCCGGTATATCTGGAGGACACATAAATCCGGCGGTGACATTTGGGCTATTTCTGGCGAGGAAGGTATCATTGATTAGAGCTGTATTATACATGGTGGCTCAATGTTTAGGAGCAATATGTGGTGTTGGACTGGTTAAGGCTTTTCAGAAAGGTTACTACAATAGGTACAAAGGTGGTGCTAACATGTTAAGTGATGGTTATAGTAAAGGAACTGGGTTAGGTGCTGAAATAATTGGAACCTTTGTTCTTGTTTACACCGTTTTCTCTGCTACAGATCCAAAAAGAAGTGCAAGAGACTCTCATGTTCCAGTTTTGGCACCACTTCCAATTGGGTTTGCAGTGTTTATGGTTCACCTTGCTACTATTCCTATCACTGGAACTGGTATCAACCCTGCTAGAAGCTTTGGAGCTGCTGTGATTTACAACAATGAGAAAGCATGGGATGACCAATGGATCTTCTGGGTTGGACCCTTTATTGGTGCTGCCATTGCTGCAATCTACCACCAGTTTGTGTTGAGAGCACAAGCTGCAAAGGCTTTGGGTTCTTTCAGGAGCTCTTCAAATCTGTAA 864 0.4618 MAKDIEAEPQGGVPNKDYHDPPPAPLFDTAELGLWSFYRALIAEFVATLLFLYVTVLTVIGYNAQTDPAHNGTNCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGLVKAFQKGYYNRYKGGANMLSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFIGAAIAAIYHQFVLRAQAAKALGSFRSSSNL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03328 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mepo3g03328 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mepo3g03328 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mepo3g03328 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mepo3g03328 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mepo3g03328 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mepo3g03328 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mepo3g03328 287 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mepo3g03328 287 SUPERFAMILY Aquaporin-like 32 271 IPR023271 -
Mepo3g03328 287 MobiDBLite consensus disorder prediction 1 22 - -
Mepo3g03328 287 Pfam Major intrinsic protein 35 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mepo3g03328 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 281 IPR034294 -
Mepo3g03328 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Mepo3g03328 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Mepo3g03328 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03328 Mepo-Chr3 43275456 43277617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03328 1 287 Major Intrinsic Protein MIP AT3G53420 82.230 8.46e-175 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03328 K09872 - cave:132192267 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03328 3 43275456 43277617 Mepo4g03995 4 49511988 49515458 ECH
Mepo3g03328 3 43275456 43277617 Mepo3g03328 3 43275456 43277617 ECH
Mepo3g03328 3 43275456 43277617 Mepo6g03820 6 50316851 50319347 ECH