Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03323 ATGGGTAATATCTCAAGCAACGGCGCCCACAACCGTCGTCGACACCCCACCTCTTCCCGACGAACTCACCCACCACCACCACCTCCGGTAACACCACAACCCGAAATCGTACCTCATCAATTCGTTTACCCTAACCCACCCATGCATTATCCTCAATATCATTACCCTGGTTATTATCCACCACCAATACCTATGCCTCATCATCATCATCCTCATATGGATCCTGCTTGGGTTTCTCGGTATTACCCTTGTGGACCTGTCGTCAATCAACCTGCACCTTTTGTTGAGCATCAGAAAGCTGTTACTATTAGAAATGATGTTAATATTAAGAAGGAGACCATTGTAATTTCGCCTGATGACGAAAATCCTGGTTTTTTTCTTGTTTCGTTTACCTTTGATGCTGCTGTTTCTGGGAGCATCACAATATTTTTCTTTGCAAAAGAAGATGAAGGCTGCATCCTCACACCGACCAAGGAAACCCATCTTGCACCTGTGACTGTACAATTCCAGCAAGGTCTTGGACAGAAGTTTAGACAGCAAGCTGGAACTGGTATTAACTTTTCAATGTTTGAGGAGTCAGATTTAGTAAAGGTGGGTGACATTGATGTTTACCCTCTAGCAGTGAAGGCAGATGCATCATCCAATAATCATGATGGATCAAATGAAACTGAGACATCTAGTAAACCAAACTCTCAGATAACTCAAGCGGTGTTTGAGAAGGAAAAAGGAGAATTCCGGGTAAAAGTTGTTAAGCAGATCTTGTCAGTGAATGGAATGCGGTATGAGCTGCAGGAGATATATGGTATTGGAAACTCAGTGGAGAGTGACATGGATGACAATGAACAAGGAAAAGAGTGTGTGATCTGCTTGTCAGAACCTCGCGACACAATTGTTCACCCCTGCCGACATATGTGCATGTGTAGTGGATGTGCAAAGGTATTGAGATTCCAGACAAATAGATGCCCGATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAAGTAGGGGGGTCTGAGGAGTGA 1026 0.4396 MGNISSNGAHNRRRHPTSSRRTHPPPPPPVTPQPEIVPHQFVYPNPPMHYPQYHYPGYYPPPIPMPHHHHPHMDPAWVSRYYPCGPVVNQPAPFVEHQKAVTIRNDVNIKKETIVISPDDENPGFFLVSFTFDAAVSGSITIFFFAKEDEGCILTPTKETHLAPVTVQFQQGLGQKFRQQAGTGINFSMFEESDLVKVGDIDVYPLAVKADASSNNHDGSNETETSSKPNSQITQAVFEKEKGEFRVKVVKQILSVNGMRYELQEIYGIGNSVESDMDDNEQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGGSEE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03323 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 335 IPR013083 -
Mepo3g03323 341 SUPERFAMILY RING/U-box 285 330 - -
Mepo3g03323 341 PANTHER MAHOGUNIN 1 335 IPR045194 GO:0061630
Mepo3g03323 341 SMART ring_2 286 324 IPR001841 -
Mepo3g03323 341 FunFam probable E3 ubiquitin-protein ligase LOG2 270 335 - -
Mepo3g03323 341 MobiDBLite consensus disorder prediction 1 38 - -
Mepo3g03323 341 MobiDBLite consensus disorder prediction 212 232 - -
Mepo3g03323 341 Pfam Zinc finger, C3HC4 type (RING finger) 284 330 - -
Mepo3g03323 341 MobiDBLite consensus disorder prediction 213 232 - -
Mepo3g03323 341 ProSiteProfiles Zinc finger RING-type profile. 286 325 IPR001841 -
Mepo3g03323 341 CDD mRING-HC-C3HC5_MGRN1-like 284 325 IPR045195 -
Mepo3g03323 341 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03323 Mepo-Chr3 43252947 43257745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03323 75 305 C3H Transcription Factor Family AT3G09770 60.593 6.04e-95 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03323 - - aprc:113862864 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03323 3 43252947 43257745 Mepo3g03323 3 43252947 43257745 ECH