Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03314 ATGAATATTCTTGGTGACCCCTTTTCACTATCCTCTTCCACCGGAGGTTTTGACAAAATTCAAAACACAAACCCTAACCCTTATCCAGCACAAACCAACAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCTGAAGTCATTGCTCTTTCTCCAAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGATTCCAAAGAGATCAAAATCTTCAGCTTCATAGAAGAGGTCACAACCTACCATGGAAGCTAAAGCAAAGGTCCAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGACTTGTGTCCACCACGATGCGGCCAGGGCCTTAGGTGACCTCACCGGAATAAAGAAACATTTTAGCAGAAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACACTCTTCTCAAGGAAGGATAGCTTTATTACACATAGAGCTTTCTGTGACGCATTAGCTGTAGAAAGTGCAAGACACTCATCTCCTACAACTCTAAATTTCCAGAATGAAGAGTCGTCAAATATGATGAACACACAAACTAGTTTGTCACATGGATTGATATCATCTCAAGGACTTCAAAATCTTCAACAATTTAGTCCACATGCAGGATTTCGTGAGCAAAGACCAAACTTGTCACTGTGGTTGAACCAAGAAAATCAACAAATTAATCATCATTCACATTCACTTGATCATGTTTCATCAGGTTTTTCTGATGTTATACAAATAATGCCACAAACTAATACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATTGGTTCAACAAGAAGCACTACTAATCCTTCCATTTTTAGTGGAAGTTTTGGTGTAATGAGTTCATCCTCTACACAAACAACGAGTTTAAACCAAAACCATGATGAGGTTAATATGGTGATTAATCAGAAAATGAAGCAGCATGAGAATTTTGATCCAAGTAGTAGTAGTGCAACTATGGTTGGTAATTCTAGTGGGTTTAGAGATTTTCTTGGAGTGAGTAACCATCAATTTCTACCTCAAGAGCTAGCAAAGTTTGCTTCCATAAGTTCATCGATGATGAGTTTAAATCAATTCAATGCTGGGTGCATCAATGAAGATTAA 1221 0.3874 MNILGDPFSLSSSTGGFDKIQNTNPNPYPAQTNKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAVESARHSSPTTLNFQNEESSNMMNTQTSLSHGLISSQGLQNLQQFSPHAGFREQRPNLSLWLNQENQQINHHSHSLDHVSSGFSDVIQIMPQTNTPMSATALLQKAAQIGSTRSTTNPSIFSGSFGVMSSSSTQTTSLNQNHDEVNMVINQKMKQHENFDPSSSSATMVGNSSGFRDFLGVSNHQFLPQELAKFASISSSMMSLNQFNAGCINED 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03314 406 Gene3D Classic Zinc Finger 98 187 - -
Mepo3g03314 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Mepo3g03314 406 MobiDBLite consensus disorder prediction 1 38 - -
Mepo3g03314 406 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
Mepo3g03314 406 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Mepo3g03314 406 FunFam protein indeterminate-domain 12-like 42 110 - -
Mepo3g03314 406 SMART c2h2final6 104 134 IPR013087 -
Mepo3g03314 406 SMART c2h2final6 63 85 IPR013087 -
Mepo3g03314 406 SMART c2h2final6 139 159 IPR013087 -
Mepo3g03314 406 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Mepo3g03314 406 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Mepo3g03314 406 Gene3D Classic Zinc Finger 59 86 - -
Mepo3g03314 406 MobiDBLite consensus disorder prediction 1 46 - -
Mepo3g03314 406 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 387 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03314 Mepo-Chr3 43176374 43178581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03314 286 388 IDZ Gene Family AT5G03150 41.429 3.44e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g03314 zf-C2H2 0.0039 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03314 K25870 - tpra:123892932 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03314 3 43176374 43178581 Mepo3g03314 3 43176374 43178581 ECH