Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03305 ATGGCGAACGACTCGTCGTTTTTGTTTGCCGGTATTCATTTCGATAGGAAAAAATTCGGCGCCGATATTGCACGCTTCCAGAAAAAAGACACCGATAACGGTTTGGCAAAGATTCAGACTGTAACAGAAGATGAAGAAAGCAAGGAAACAATAGAAGCTGTACCTGGAAAGAAGAGGAAGCGCAAGAAAACCTCTTCTGAAGCTGTTGACGGATTCAGTGTGTTCCAAAGTTCCACATCCAAGTCAAACAAAGAGGTCCAAGCCGATGATGATGATGGGTGCATTCGTCTGAAGAAAGAACAAAATAAGCAACTCGAGCACGATGCTATCTTCAGGAAGAATCATAACATTCATGTCTCCGGTTACAATGTGCCATCCCCACTTCAAAGCTTTGATGAGTTGAAAACAAGATATAAATGTCCATCCTATTTATTACGGAATCTGGCTGAACTCGGATTCAGAGAACCAACACCAATCCAACGGCAGGCTATTCCAGTACTCTTACAGGACCGTGAATGTTTTGCGTGTGCCCCAACTGGCTCTGGAAAAACCCTTGCATTTGTGTGTCCCATGCTCATGAAGCTCAAGGCTCATGCAAAAGGTGGCGTTCGAGCTGTTATCATTTGTCATAGCCGTGAATTATCTGGTCAAACATACAGAGAGTGCAAAAAGCTGGCCAAAGGAGAAAAGTTTCGCATCAAGTTAATGACAAAAAATCTTTTAAGAAATGCTAATTTTTCAAAATTTTCTTGTGACATACTTATATCCACTCCACTTCGATTATGCTTGGCTATCAAGAAGAAAAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAATCTGATAAGCTATTTGAGCCACAATTGTTCAAGCAGATTGATTCTATTATCAAAGCATGCACAAACCCGTCAATAATACGCTCTCTGTTTAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATATGGCTTCTGATACAATTAAGCAAAAGTTAGTTTTTACCGGAAGTGAAGAAGGAAAACTTCTAGCGATTCGGCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAGCGCGCAAAAGAGCTGTATGGGGAACTTGCATTTGACAATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTGGTAAAACATGGGTTTTGATTGCCACTGACGTGGTTGCTCGGGGAATGGATTTCAAAGGCATAAACTGTGTGATCAATTATGATTTCCCAGATTCTGCATCGGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGGGAAGCGATTACATTTTACACAGAGGAGGACATTCCATTCCTGCGGAATGTATCTAATCTAATGGCATCCTCGGGCTGTGAAGTTCCATCTTGGTTGACGGAGTTGCAGTTGCAGAAGAAGAAGTGGAAGAAGCATCGACCTGACAGAGATTCTATCTCAACCAAATCGGATCTACCCAAAAGTGATTTAATCTCAACCAAACCGAAGTTGCAGAAGAAGTTGAAGAAGCACCGACCCAAAAAAGATTCTATTGTAACCAAACCGGATCTACCCAAAAGTGATTCGATCTCAACCAAACCGAAGTTGCAGAAGAAGTTGAAGAAGCACCGCGACCCAAAAGAGATTCTATGTTAA 1764 0.4201 MANDSSFLFAGIHFDRKKFGADIARFQKKDTDNGLAKIQTVTEDEESKETIEAVPGKKRKRKKTSSEAVDGFSVFQSSTSKSNKEVQADDDDGCIRLKKEQNKQLEHDAIFRKNHNIHVSGYNVPSPLQSFDELKTRYKCPSYLLRNLAELGFREPTPIQRQAIPVLLQDRECFACAPTGSGKTLAFVCPMLMKLKAHAKGGVRAVIICHSRELSGQTYRECKKLAKGEKFRIKLMTKNLLRNANFSKFSCDILISTPLRLCLAIKKKKVDLSRVEYLVLDESDKLFEPQLFKQIDSIIKACTNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASDTIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLRNVSNLMASSGCEVPSWLTELQLQKKKWKKHRPDRDSISTKSDLPKSDLISTKPKLQKKLKKHRPKKDSIVTKPDLPKSDSISTKPKLQKKLKKHRDPKEILC 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03305 587 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 334 IPR014001 -
Mepo3g03305 587 SMART helicmild6 386 467 IPR001650 -
Mepo3g03305 587 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 61 577 - -
Mepo3g03305 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 479 IPR027417 -
Mepo3g03305 587 SMART ultradead3 152 349 IPR014001 -
Mepo3g03305 587 MobiDBLite consensus disorder prediction 45 68 - -
Mepo3g03305 587 Gene3D - 108 341 IPR027417 -
Mepo3g03305 587 CDD SF2_C_DEAD 346 476 - -
Mepo3g03305 587 MobiDBLite consensus disorder prediction 514 587 - -
Mepo3g03305 587 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Mepo3g03305 587 Pfam DEAD/DEAH box helicase 157 321 IPR011545 GO:0003676|GO:0005524
Mepo3g03305 587 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 506 IPR001650 -
Mepo3g03305 587 Gene3D - 342 581 IPR027417 -
Mepo3g03305 587 Pfam Helicase conserved C-terminal domain 364 467 IPR001650 -
Mepo3g03305 587 CDD DEADc_DDX52 144 337 IPR044764 GO:0003724|GO:0005524|GO:0030490
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03305 Mepo-Chr3 43076362 43081556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03305 127 505 Eukaryotic Initiation Factors Gene Family AT3G19760 29.921 2.14e-52 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03305 K14779 - gmx:100800969 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03305 3 43076362 43081556 Mepo3g03305 3 43076362 43081556 ECH