Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03250 ATGAAGAGACAAAGAGATATAGAAGGATTAGAAAGCATAAATTTGGCAAATTGTCTAATGATGCTCTCTTATCCCCAACAACAACAACATAACAATAAACCAAATCAAAAAAGTTTTGCGCCAGTGGAATATGAGTGCAAAACGTGCAACAAAAAATTCTCATCCTTTCAAGCACTAGGTGGCCACAGAGCTAGCCATAAAAGATCAAAGCTAGAAGGGGATGAAGTCATTACAAATTCTACATCTTTGAGCTTAGGAAATAAGCCCAAAATGCATGAATGTTCCATTTGTGGGCAAAATTTTTCATTGGGGCAAGCATTGGGTGGACACATGAGAAGGCATAAAGCTATTATCAACGAAGAGGTTTCTTCAATGGAACAAGTTGTTATGAAATTACCAGTTTTAAAGAGATTGAATAGTGCAAGGGTTATGTGCTTGGACTTGAACTTGACGCCATTGGAGAATGATTTGAAGTTGTTGTTTGGAAAGATGGCTCCGAATCTTGATGTTTTAGTTTGA 519 0.3699 MKRQRDIEGLESINLANCLMMLSYPQQQQHNNKPNQKSFAPVEYECKTCNKKFSSFQALGGHRASHKRSKLEGDEVITNSTSLSLGNKPKMHECSICGQNFSLGQALGGHMRRHKAIINEEVSSMEQVVMKLPVLKRLNSARVMCLDLNLTPLENDLKLLFGKMAPNLDVLV 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03250 172 Gene3D Classic Zinc Finger 70 137 - -
Mepo3g03250 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Mepo3g03250 172 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Mepo3g03250 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Mepo3g03250 172 PANTHER ZINC FINGER PROTEIN ZAT5 12 156 - -
Mepo3g03250 172 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
Mepo3g03250 172 SMART c2h2final6 92 114 IPR013087 -
Mepo3g03250 172 SMART c2h2final6 44 66 IPR013087 -
Mepo3g03250 172 Pfam C2H2-type zinc finger 44 68 - -
Mepo3g03250 172 Pfam C2H2-type zinc finger 92 116 - -
Mepo3g03250 172 Gene3D Classic Zinc Finger 43 69 - -
Mepo3g03250 172 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03250 Mepo-Chr3 42644146 42644710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03250 1 170 C2H2 Transcription Factor Family AT2G37430 47.727 4.41e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g03250 zf-C2H2_6 9.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03250 - - gmx:100806997 253.832