Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03232 ATGGCGGCGTCACGGCGGCTCCGTGAACTTCAATCCGAACCTTCAAACAAGATCTGCGTCGACTGTTCCCAAAAGAATCCACAATGGGCCTCCGTCTCTTACGGCGTTTTCATGTGTCTCGAATGCTCCGGCAAACACCGTGGCCTCGGCGTTCACATCTCCTTCGTCCGATCCGTTACAATGGATTCATGGTCCGATCTCCAGATCAAGAAAATGGAAGCCGGTGGTAACCGCAACCTCAACACGTTCCTTTCTCAATACGGAATCTCTAAGGAAACTGATATCATCACCAAGTATAATTCAAACGCTGCTTCGATCTACCGCGATCGTATTCAAGCGATCGCGGAAGGTCGTTCATGGCGTGATCCACCTGTTGTTAAGGAGAATGCTAGTACTCGTGCTGGAAAAGGGAAGCCTCCTCTGGCTGCTGCGTCGAATGGTGGTGGTTGGGATGATAATTGGGATAATGATGATGGTTATGGTTATGGATCGCGTGGTGGTGGTGATATTAGGAGGAATCAGAGTACTGGTGATGTAATTGGGTTTGTTGGAAGTGGTGTTACGCCCTCGTCGAGGTCGAAATCGACGGAGGATATTTACACGAGGACACAATTGGAGGCTTCTGCTGCGAATAAGGAAGGTTTTTTCGCGAAGAAGATGGCGGAGAATGAATCCAGACCGGAGGGGCTTCCTCCTTCGCAGGGTGGGAAGTATGTTGGATTTGGATCTAGTCCTGGGCCTGCTCAGAGAATTTCTCCTCAGAATGATTATTTGTCTGTTGTTTCTGAGGGAATTGGTAAATTGTCGATGGTTGCTCAATCTGCTACTAAAGAGATCACTGCCAAGGTAAAGGACGGTGGTTATGATCACAAGGTCAATGAAACTGTCAATATTGTCACTCAGAAGACATCGGAGATTGGACAAAGGACATGGGGTATAATGAAAGGGGTCATGGCGTTGGCCTCTCAAAAGGTTGAGGAGTTCACCAAAGATTACCCGAATGGGAATTCTGATAACTGGCCACGAAATGAAAATGATAGACATGATTTCAATCAAGAGAATAAAGGCTGGAATTCTTCTACTTCTACCAGAGAAGGACAACCTTCATCAGGTGGACAAACTAATACCTATCACTCAAACTCTTGGGATGATTGGGACAACCAAGATACAAGGAAGGAAGTACCAGCTAAAGGATCAGCTCCTCATAATAATGATGATTGGGCTGGCTGGGATGATGCCAAAGATGATGATGATGAATTTGATGATAAATCTTTTGGTCATAATGGGACGTCAGGTTCTGGCTGGACAGGAGGAGGCTTTCACTAA 1326 0.4653 MAASRRLRELQSEPSNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDLQIKKMEAGGNRNLNTFLSQYGISKETDIITKYNSNAASIYRDRIQAIAEGRSWRDPPVVKENASTRAGKGKPPLAAASNGGGWDDNWDNDDGYGYGSRGGGDIRRNQSTGDVIGFVGSGVTPSSRSKSTEDIYTRTQLEASAANKEGFFAKKMAENESRPEGLPPSQGGKYVGFGSSPGPAQRISPQNDYLSVVSEGIGKLSMVAQSATKEITAKVKDGGYDHKVNETVNIVTQKTSEIGQRTWGIMKGVMALASQKVEEFTKDYPNGNSDNWPRNENDRHDFNQENKGWNSSTSTREGQPSSGGQTNTYHSNSWDDWDNQDTRKEVPAKGSAPHNNDDWAGWDDAKDDDDEFDDKSFGHNGTSGSGWTGGGFH 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03232 441 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Mepo3g03232 441 MobiDBLite consensus disorder prediction 223 253 - -
Mepo3g03232 441 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Mepo3g03232 441 Gene3D Arf GTPase activating protein 1 132 IPR038508 -
Mepo3g03232 441 MobiDBLite consensus disorder prediction 354 383 - -
Mepo3g03232 441 MobiDBLite consensus disorder prediction 329 441 - -
Mepo3g03232 441 CDD ArfGap_ArfGap1 3 117 - -
Mepo3g03232 441 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Mepo3g03232 441 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Mepo3g03232 441 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Mepo3g03232 441 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Mepo3g03232 441 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 441 IPR044519 GO:0005096|GO:0016192
Mepo3g03232 441 Pfam Putative GTPase activating protein for Arf 5 105 IPR001164 GO:0005096
Mepo3g03232 441 SUPERFAMILY ArfGap/RecO-like zinc finger 5 114 IPR037278 -
Mepo3g03232 441 MobiDBLite consensus disorder prediction 128 152 - -
Mepo3g03232 441 MobiDBLite consensus disorder prediction 384 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03232 Mepo-Chr3 42497125 42501400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03232 5 87 C2H2 Transcription Factor Family AT4G05330 48.810 7.26e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03232 K12492 - gmx:100778302 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03232 3 42497125 42501400 Mepo3g03232 3 42497125 42501400 ECH
Mepo3g03232 3 42497125 42501400 Mepo4g02687 4 35566977 35570516 PCT