Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03221 ATGAACCACTGCGTTCCATATTTCGAATCTCAAATGGATCCTCGTCCTAAGAAACCCATCATTGCAGATGATGAGATCATGGAGTTGTTATGGCAAAACGGCCAAGTCGTTACACAGAGACCAAACCACCGTCATGTGAAGAAGCCACCGCCGGTGAAAAACTACAATCAATATCTCTTCATGCAAGAAAACGAAATGGCTTCATGGCTTCATTACGACGATTCTCCCTTGGAACAAACCTTCTCCACTGATTTCCTCAATAACAACAGTACCATACAAACTCCGTCGTCGGTGGTTCCTTCTCGTCCTCCAATTCCCCCGCCACGGAGGATAGGGCACGTGCAGCCTGAGACACCAAACTTTGCGTACTTCGCGAAGCACGGTGTTAGAAACGAGCCAGGACCGTCGTCGATTTTGAACACTGCTGCGAGGGAATCAACGGTGGTGGATTCGTGTGATACGGTAAGAAGCTTGGAAGGAGACACCGAAGTGGCGGTGGTTTCAACAACTTTTGATGAACCGGGCGGTTCGAGTAGCAGTGAAGAACCTGAACCGGTTCGGAAGGTAGATGAGCTGGATCGAAAGAGGAAGGGAATAGAAGCGGAGGAATGGGAATATCAGAGCGAGGATATTGATTTTGAATATGCGGAAGCCAAAAAAAATGTCAGTGGATCATCTACAAAGAGATCTCGTGCTGCCGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAGTCTGACAAAGCATCTATGCTGGATGAAGCAATTGATTACTTGAAGTCGCTGCAGTTACAAGTGCAGATGATGTCAATGGGATGTGGCATGGTGCCTATGATGTTTCCTGGAATCCAGCAGTATATGCCAACAGTTGGAATGGGAATGGGGATGGGTATGGAAATGGGAATAAACAGACCAGTAATGCCATTTCCCAATATGTTATCTGGTGCTGCTTTGCCTGCAGCCGCGAATTTGGGACCAAGGTTCGCAATGCCTCCTTTCCACATGCCGCTTGTTCCAACGCCTGGCTCATCCAGAATGCATGCAGCAAATCAGGTAGATAATAATGTGATCACCTCAGCTGGAACACATGATTCAAATCAGTCACGTATCCCAAACTTCAGTGATCCTTATCAACAATGTCTTGGACCCCACCAGATGCAGTTTCAATTAATGCAGAATCAAGCAATGAACCAACTAAATGTCAGCAGGCCTCTTGAGAAACCAGAAACCCGCCAGTCAGGACATAAATGA 1305 0.4659 MNHCVPYFESQMDPRPKKPIIADDEIMELLWQNGQVVTQRPNHRHVKKPPPVKNYNQYLFMQENEMASWLHYDDSPLEQTFSTDFLNNNSTIQTPSSVVPSRPPIPPPRRIGHVQPETPNFAYFAKHGVRNEPGPSSILNTAARESTVVDSCDTVRSLEGDTEVAVVSTTFDEPGGSSSSEEPEPVRKVDELDRKRKGIEAEEWEYQSEDIDFEYAEAKKNVSGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIDYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPTVGMGMGMGMEMGINRPVMPFPNMLSGAALPAAANLGPRFAMPPFHMPLVPTPGSSRMHAANQVDNNVITSAGTHDSNQSRIPNFSDPYQQCLGPHQMQFQLMQNQAMNQLNVSRPLEKPETRQSGHK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03221 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 297 IPR036638 GO:0046983
Mepo3g03221 434 FunFam Basic helix-loop-helix transcription factor 226 289 - -
Mepo3g03221 434 SMART finulus 237 286 IPR011598 GO:0046983
Mepo3g03221 434 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 27 419 IPR031066 -
Mepo3g03221 434 Gene3D - 226 289 IPR036638 GO:0046983
Mepo3g03221 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983
Mepo3g03221 434 CDD bHLH_AtPIF_like 231 294 IPR047265 -
Mepo3g03221 434 MobiDBLite consensus disorder prediction 170 193 - -
Mepo3g03221 434 Coils Coil 237 257 - -
Mepo3g03221 434 Pfam Helix-loop-helix DNA-binding domain 235 281 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03221 Mepo-Chr3 42354489 42358803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03221 1 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.416 3.42e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g03221 HLH 3.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03221 - - mtr:11419484 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03221 3 42354489 42358803 Mepo3g03221 3 42354489 42358803 ECH
Mepo3g03221 3 42354489 42358803 Mepo4g02698 4 35697371 35704722 PCT