Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03198 ATGGCATCGACTCAAGGTCAAGTCATTACATGCAAAGCTGCGGTGGCCTGGGAACCCAACAAACCCTTAACAATCGAAGATGTTGAGGTCGCTCCTCCACAAGCCAACGAAGTCCGTATTCAAATCCTCTTCACCGCTCTCTGTCACACCGATGCTTATACTTGGAGTGGCAAAGATCCTGAAGGCCTTTTCCCTTGCATTCTCGGTCACGAAGCTGCTGGTATCGTGGAAAGTGTTGGAGAAGGTGTCACTGATTTGAAGCCAGGGGATCATGTCATTCCATGTTACCAAGCTGAATGTGGAGAATGTAAGTTTTGCAAATCCGGCAAGACAAATCTCTGTGGGAAGGTTCGTGCTGCTACAGGTGTCGGGGTTATGATGAATGATCGCAAGCCTCGTTTTTCTATCAAGGGAAAACCCATTTATCATTTTATGGGTACTTCTACTTTTAGTCAGTACACTGTTGTTCATGATGTTAGTGTTGCTAAGATTCATCCAGATGCTGCTTTGGACAAAGTTTGTCTTCTTGGTTGCGGTGTTCCAACTGGCCTCGGAGCTGTCTGGAACACTGCAAAAGTTGAGACAGGGTCCATTGTTGCTATTTTCGGCCTTGGAACTGTTGGCCTTGCCGTTGCAGAGGGTGCAAAATCTGCTGGTGCATCACGGATTATTGGCATAGATATTGACAGCAACAAGTTTGATACAGCCAAAAACTTTGGAGTCACCGAGTTCATTAATCCAAAAGACCATGAGAAACCAATTCAGCAGGTTATAGCTGATCTAACAGATGGAGGAGTCGATTATAGCTTTGAGTGCATTGGAAATGTCTCTGTGATGAGATCTGCATTGGAATGCTGCCACAAGGGATGGGGGACATCAGTTGTTGTGGGCGTTGCTGCGTCAGGGCAGGAAATATCAACTCGCCCTTTCCAGTTGGTGACTGGGCGTGTATGGAAAGGAACAGCTTTTGGTGGCTTTAAGAGCAGGTCACAAGTGCCTTGGCTTGTTGAAAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCATAATTTGACTCTTGCGGAGATCAACAAGGCTTTTGATCTTATGCATGAAGGGAAATGTCTTCGTGTTGTGCTTGCATTGCATTGA 1140 0.457 MASTQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTDLKPGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGVMMNDRKPRFSIKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAALDKVCLLGCGVPTGLGAVWNTAKVETGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKFDTAKNFGVTEFINPKDHEKPIQQVIADLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVVVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLAEINKAFDLMHEGKCLRVVLALH 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03198 379 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Mepo3g03198 379 Pfam Zinc-binding dehydrogenase 207 329 IPR013149 -
Mepo3g03198 379 SUPERFAMILY GroES-like 327 376 IPR011032 -
Mepo3g03198 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 342 IPR036291 -
Mepo3g03198 379 CDD alcohol_DH_class_III 9 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Mepo3g03198 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Mepo3g03198 379 Gene3D - 14 373 - -
Mepo3g03198 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 183 321 - -
Mepo3g03198 379 PANTHER ALCOHOL DEHYDROGENASE 6 375 - -
Mepo3g03198 379 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 11 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Mepo3g03198 379 Gene3D - 183 321 - -
Mepo3g03198 379 SUPERFAMILY GroES-like 4 199 IPR011032 -
Mepo3g03198 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 14 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03198 Mepo-Chr3 42129341 42132109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03198 1 332 Monolignol Biosynthesis Gene Families AT1G72680 25.519 9.73e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03198 K00121 - mnt:21398977 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03198 3 42129341 42132109 Mepo3g03198 3 42129341 42132109 ECH
Mepo3g03198 3 42129341 42132109 Mepo4g02727 4 36049861 36053901 PCT