Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03159 ATGGAAAATTCTGGAAAATCAATAATCAACAACAACACTAAATTATTGAATCCATGGACGCTTCATTTTCAAAAACTCGCTCTCGAACTCAAATGCCCTCTCTGCTTGAGCTTGTTCAAGAAACCAGTTTTGTTGCCATGCAATCATTTGTTCTGCAGTTCCTGTTTGGCGGATAGTACTTCGATTCGTTCTGAATGTGCTCTCTGTAACACCAAGCACTCTCAAAAAGATATTAGGCATTTGCCTTTTTTGGAAAGTATAGTGACAATTTATAAAAGCTTGGATGCGACCTTTTGTGCAAACGCTTTTCAGCAACGTTCTTCTGATAATACGAGGGTTTTGGAGCAGTGCCAAACTCTTTACAATTCAGCTTGTAATAATAAGAAGGTTGACAAAGTTCTGCAGAATTCATGCATGTCAAATGAAGTCGGGGTTGGCAAGAATCACCAATCTGGGATTAAGATGAATGGTAAAGCCAAGGAGGTTGAAATGTCTCACAAGAGAGGGGCTGACAACCACCTTGCAGAGAAGCCCGATTCAATGAATTTGAATCAAGCGACACAATCAGAACCAGACAGCCCTCCATTTTGTGATACCAAAGGTTCTGATAATGGTTGCAGTGATCAAAACAGCGAGAAGCCACTCAGTCTTGGGAGGTCTGAAAGTTCGTCATTGAAAAGATCAAGCACAGCAGGAAAAGGTAATTTGAAAGAAACAATGCCTCATTTCTGGTCTGAAAGTTCTGCCTCTGAAAACGAGGATCTTACGAGAGATCTTAAGAGACAAAAGAATCTTACAAATGGAGATGGTATTGTTCAACAAAGCACCTCATATCATAACAAGCTTGTGGATTCCCGCTGTGACTTGGAAATTAAATCTGACAAGGACACTGGTGCACTTGTACCTTCAAATGCACCAAGTGGCTTGTATCCAAGTACTAGCATTTGTTCGTTTTGTCAGTCCTCTAAAATTTCAGAGGTTACTGGGTCAATGCTGCATTATGCAAGCGGGATTTCAGTTGCGGGAGAGGCTGCAATGCAACCAAATGTTGTGCATGTGCATAAAGTTTGTATTGACTGGGCACCACAAGTGTATTTTGTTGGTGAAACTGTTAAGAATTTGAAAGCAGAAGTGGCCCGAGGAGCAAAGCTTAAATGCACCAAATGCGGTAAAAAGGGAGCTGCTCTTGGTTGCTTTGTCAAGTCATGCAGAAGAACTTATCATGTTCCTTGTGCAATGGACATCTCTGCTTGCCGCTGGGATCATGTGGATTATCTCTTGTTGTGTCCAAGTCATTCAAATGTCAAATTTCCAAACGAGAAATCTAATCTTAATAAACAGGCGACTCAGAAGCATCCTGTTTCATCTCATCTGCCATCTCAACAGTCAAACCAACTGGGAGCTTTTCAGGATGATGGTAAAAAAATGGTTTTCTGTGGATCTGCTCTATCAAATGAAGAAAAGGTGCTATTGATTAATTTTGCAAGCAAGGTTGGTGCTACAGTGTCCAAGTGTTGGACCTCAGATGTCACACATGTGATCGCAGCAACTGATGCAAACGGAGCATGCTCTAGGACATTGAAAGTTTTGAGGGCGATTCTAAGTGGACAATGGATCCTAAAAATGGACTGGATAAGAGCATGCATGAAAGAGATGAATCTTGTAGAAGAAGAACTGTATGAAATTGATCTTGACAACCAAGGGTGTCAAGGTGGCCCAAAAGCTGGCAGGCTTAGGGCATTGGCCAACGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGTGAATATGATTTGAGTTATAAGAAATATCTTGAAGATTTAGTTGATGGGGGAGGAGGTGTCGTTTTGAAAAGCAAGGATGAATTGGAAGTTGGAAGAGATGCAAATTTGTTGGCAGTTTACAATCTTGATCCCCCAGAAGGATGTGAGCTGGAGGACGAAGTTTCAATTCTTTGGCAGAGATTAACTGAAGCAGAAAATTTAACTGCCAATACTGCTGGTCACACGTGGATTCTGGAGTCAATTGCTGCATGCAAATTGCAGCCTTTTGTTAGCTAA 2067 0.4122 MENSGKSIINNNTKLLNPWTLHFQKLALELKCPLCLSLFKKPVLLPCNHLFCSSCLADSTSIRSECALCNTKHSQKDIRHLPFLESIVTIYKSLDATFCANAFQQRSSDNTRVLEQCQTLYNSACNNKKVDKVLQNSCMSNEVGVGKNHQSGIKMNGKAKEVEMSHKRGADNHLAEKPDSMNLNQATQSEPDSPPFCDTKGSDNGCSDQNSEKPLSLGRSESSSLKRSSTAGKGNLKETMPHFWSESSASENEDLTRDLKRQKNLTNGDGIVQQSTSYHNKLVDSRCDLEIKSDKDTGALVPSNAPSGLYPSTSICSFCQSSKISEVTGSMLHYASGISVAGEAAMQPNVVHVHKVCIDWAPQVYFVGETVKNLKAEVARGAKLKCTKCGKKGAALGCFVKSCRRTYHVPCAMDISACRWDHVDYLLLCPSHSNVKFPNEKSNLNKQATQKHPVSSHLPSQQSNQLGAFQDDGKKMVFCGSALSNEEKVLLINFASKVGATVSKCWTSDVTHVIAATDANGACSRTLKVLRAILSGQWILKMDWIRACMKEMNLVEEELYEIDLDNQGCQGGPKAGRLRALANEPKLFSGLKFYFSGEYDLSYKKYLEDLVDGGGGVVLKSKDELEVGRDANLLAVYNLDPPEGCELEDEVSILWQRLTEAENLTANTAGHTWILESIAACKLQPFVS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03159 688 CDD BRCT_Bard1_rpt1 477 555 - -
Mepo3g03159 688 ProSiteProfiles Extended PHD (ePHD) domain profile. 313 433 IPR034732 -
Mepo3g03159 688 Gene3D BRCT domain 585 681 IPR036420 -
Mepo3g03159 688 Pfam BRCA1 C Terminus (BRCT) domain 474 549 IPR001357 -
Mepo3g03159 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 103 IPR013083 -
Mepo3g03159 688 Pfam Zinc finger, C3HC4 type (RING finger) 29 73 - -
Mepo3g03159 688 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 314 686 IPR031099 GO:0006281|GO:0006974
Mepo3g03159 688 MobiDBLite consensus disorder prediction 183 250 - -
Mepo3g03159 688 SUPERFAMILY BRCT domain 476 563 IPR036420 -
Mepo3g03159 688 ProSiteProfiles BRCT domain profile. 472 562 IPR001357 -
Mepo3g03159 688 SMART BRCT_7 585 681 IPR001357 -
Mepo3g03159 688 SMART BRCT_7 466 552 IPR001357 -
Mepo3g03159 688 Gene3D BRCT domain 473 578 IPR036420 -
Mepo3g03159 688 SUPERFAMILY RING/U-box 29 92 - -
Mepo3g03159 688 FunFam Breast cancer type 1 susceptibility protein homolog 473 579 - -
Mepo3g03159 688 MobiDBLite consensus disorder prediction 145 167 - -
Mepo3g03159 688 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Mepo3g03159 688 SMART ring_2 32 69 IPR001841 -
Mepo3g03159 688 SMART ring_2 386 432 IPR001841 -
Mepo3g03159 688 ProSiteProfiles BRCT domain profile. 583 688 IPR001357 -
Mepo3g03159 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 435 IPR013083 -
Mepo3g03159 688 Pfam PHD-like zinc-binding domain 354 433 - -
Mepo3g03159 688 SUPERFAMILY BRCT domain 587 685 IPR036420 -
Mepo3g03159 688 MobiDBLite consensus disorder prediction 183 256 - -
Mepo3g03159 688 ProSiteProfiles Zinc finger RING-type profile. 32 70 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03159 Mepo-Chr3 41688759 41695220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03159 29 78 C3H Transcription Factor Family AT3G07200 34.000 1.81e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03159 3 41688759 41695220 Mepo3g03159 3 41688759 41695220 ECH