Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03136 ATGGGCTTGAGAGACATAGGAGCTTCACTACCTCCTGGATTTCGGTTTTATCCAAGTGATGAGGAATTGGTGTGTCACTATCTTTACAAAAAGATCGCAAATGAGGAAGTTCTTAAGGGTACTTTGATTGAAATTGACCTTCACATATGTGAACCATGGCAACTTCCAGAGGTGGCAAAGCTTAATGCAAATGAATGGTATTTCTTTAGCTTCCGGGACCGCAAATATGCAACTGGATTTAGAACAAATAGAGCAACTATATCTGGGTATTGGAAAGCAACTGGGAAAGATCGTATGGTGTTAGATCCAATCACACAAGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGTATCAAAACAGGGTGGATTATGCATGAATTTCGCTTGGAGACACCACACATGCCTCCTAAGGAGGACTGGGTATTGTGTAGAGTCTTTCACAAAAGCAAAGAAGAGAACAACAACAACAATAATAGTTCCAAACTCAACACACAACAATTCATGTATGAGACAACACCTCCATCCCTAACTTTGATGTCATCATCTCCAACAAATTACCAAACCATCCCTAGTGGCTATAACAAACTTGATTCTTTTTCTTCCCCCATGACAACACTTCATCATTTAAATCCAAATCAAAACAATTCTTCCATGATGAATCTCCTTCAATATTCTCGTGAAACAAATCCAAATAATGATAGCACGGTTACTCAAATTAGTTCCAAAGGTGATGATGGATATGGATTCTTGTGGAACATGGATTTGGAAGAAAATAGCCTAGAAGATGGTGTGGCTTCAGACTTGGACGCAATAAGATTTGAGGTTGATAATGATAATGTGGTCTTACTATAA 876 0.3881 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLIEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRMVLDPITQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENNNNNNSSKLNTQQFMYETTPPSLTLMSSSPTNYQTIPSGYNKLDSFSSPMTTLHHLNPNQNNSSMMNLLQYSRETNPNNDSTVTQISSKGDDGYGFLWNMDLEENSLEDGVASDLDAIRFEVDNDNVVLL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03136 291 Gene3D NAC domain 19 162 IPR036093 GO:0003677|GO:0006355
Mepo3g03136 291 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 231 - -
Mepo3g03136 291 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Mepo3g03136 291 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Mepo3g03136 291 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03136 Mepo-Chr3 41462128 41466848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03136 6 247 NAC Transcription Factor Family AT1G56010 45.200 1.64e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo3g03136 NAM 1.8e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03136 3 41462128 41466848 Mepo4g02775 4 36447685 36452243 PCT