Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03132 ATGCATACAGCAGGTCAAATGGATCTAACTTCAGTGAAATGTGTCCTCAACAGTATTTCTCGATTCATTCATCTAGTTTCTTGCCAAGCAGTTAAGCCTATGCCCCTTCAGAAGAACTGTAATAATATGGTTGCCACGTTGAGGTGTTTAAAACCAGTCCTTGACGATGTTGTGGATTACAAAATCCCTTTAGATGAAAATCCGTATAGAGAATGTGATGAATTGGATATACAGGTTAATGAAGCTAGGGAGTTCGTTGAGAAATGGAGCTCAAAGTCGAGCAGGATCCATAGTGTTCTTCAAAGTGGGGAGTTGTTAATAAAGTTACAGAGCACTTCAGTTAGAATATGTCACATAATTTATAGATCCTCAAAGTCGACTTCATCTGCCTCGGTTTTGGATAATCTTCAGCACCATATACAGGAACTTCAGTCTCTGGAGAAAGAATCAGCTTCAGTCTATATAGAAGAAGCACTGAGAAATCAAAAGAATAATACTAAACCTTGCTATGAACGTCTAGGGGAAATTATAGGGCTTCTTAAATTGACATCAAACCAGGAGCTTTTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCGGAAGTCAACAAAACAAAAGAGGAGTTGGATAAAATTAACCAAATTGTGAATCTTGTGTGCAGCTTACGTGATTATGTGATGAAAACTAAATGCCCTGAAGTCAAAAGTGGTGTCTCAGTCCCACCATACTTTCGATGCCCTTTATCGCTCGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACATACGAGAGGCAATCCATCCAAATGTGGCTTGATCATGGGCTGAATGTTTGTCCCAAGACTCACCAGAGACTAACTCATGCAAATCTTATTCCCAATTATACTGTTAAAGCTATGATTGCAAATTGGTGTGAAGAAAATAATGTCGAACTTCCTAGTAACTCAAACCAGAGTAATTCTACCCAGAGTTCACCCCCCTCAGATTATCTATTGCATCAAGATTTAGATCGTGTCTGTAGTTTTGGGTCTTCAAATAGTAGCAATTCCAATTCAAAATCATCTCTTCAAACTGCAAATTCATTTGGGAAGCAAAAGGGTGACGACTCTTCCAGATTAAGTGGTGAATCCAATAGATGTCAGAGTGGTGACACGGATAAGTTTGAGCAGCAATCTCTTGCTCCTTCGTGTAGTCACAGCAGAAGTGAATCATTTTCAAGTTCTATTTCTAGTACAGATTATGTACCTTCTGTTTCAAAAAAGGTGCCAGGGACATCACATAAGCATCAACATGCGCCGTTATCTGGAGAAATTACTAATAATGTGTTTCCTGCTTCTCCTGCATATAAAGAATTCGGGAATTTCCCAACTGTATCACGAGAGCAATTTGAAAGTCCTGGATTAAAAAATGCAACAATGGAGAACGAAAATAAGTACAATAACAATAATAATATTGTTATTACTAGCCATTCAAATTCAAAAAATGATGCCAGCCCTGTTTTCAACTCGGAGCATGATAAATTGACGACCGCATCTCATGTCAGTAAGTTGATCGAAGATCTACAGAGTCAATCAAATGAAACAAAAGCTGCTGCTGCTGAAGAATTGCGTCTCCTTACCAAGCATAACATGGAAAACCGTATTATTGTAGGGCAATGTGGGACTATCATGCATTTACTTCCACTGCTATCTTCAAACACAAAGATAACACAAGAGCATGCTGTGACAGCTATACTGAACTTGTCGATTAACGAACACAACAAGACTTTGATTATGGAAGCAGGAGCTATAGAGCCACTTATCCATGTTTTGAAGTCAGGAAATAACGGTGCCAAGGAAAATTCTGCTGCTACTCTATTCAGCCTCTCAGTACCAGAAAACAATAAGGCGAAAATTGGTCGTTCTGGTGCTATTAAAGCTTTGGTGGAACTTCTAGCTTCTGGAACTCTTAGGGGGAAGAAAGATGCTGCAACTGCTTTATTTAACCTATCAATATTTCACGAGAATAAAGCTCGGATAGTTCAAGCTGGAGGGGTGAAGTTTCTGGTTATGCTATTGGACCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTATCGACAATCCCAGAGGGTCGGGTAGAAATTGTACGGGAAAGGGGAATCCCCTTTTTGGTTGAACTTGTGGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCGTCCATTCTCTTGCAACTAAGCCTTCACAGCCGTAAGTTTTGTACCTTGATTCTTCAGGAAGGAGCTGTACCTCCCGTAGTTGCATTGTCTCAGTTTGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGTCATTTTCGTAGTCAGCGTGAAGGAGCTTCCGGGAGAGGAAAATCATGA 2412 0.4026 MHTAGQMDLTSVKCVLNSISRFIHLVSCQAVKPMPLQKNCNNMVATLRCLKPVLDDVVDYKIPLDENPYRECDELDIQVNEAREFVEKWSSKSSRIHSVLQSGELLIKLQSTSVRICHIIYRSSKSTSSASVLDNLQHHIQELQSLEKESASVYIEEALRNQKNNTKPCYERLGEIIGLLKLTSNQELLKESIAVEKERLNAEVNKTKEELDKINQIVNLVCSLRDYVMKTKCPEVKSGVSVPPYFRCPLSLELMLDPVIVASGQTYERQSIQMWLDHGLNVCPKTHQRLTHANLIPNYTVKAMIANWCEENNVELPSNSNQSNSTQSSPPSDYLLHQDLDRVCSFGSSNSSNSNSKSSLQTANSFGKQKGDDSSRLSGESNRCQSGDTDKFEQQSLAPSCSHSRSESFSSSISSTDYVPSVSKKVPGTSHKHQHAPLSGEITNNVFPASPAYKEFGNFPTVSREQFESPGLKNATMENENKYNNNNNIVITSHSNSKNDASPVFNSEHDKLTTASHVSKLIEDLQSQSNETKAAAAEELRLLTKHNMENRIIVGQCGTIMHLLPLLSSNTKITQEHAVTAILNLSINEHNKTLIMEAGAIEPLIHVLKSGNNGAKENSAATLFSLSVPENNKAKIGRSGAIKALVELLASGTLRGKKDAATALFNLSIFHENKARIVQAGGVKFLVMLLDPADGMVDKAVALLANLSTIPEGRVEIVRERGIPFLVELVESGSQRGKENAASILLQLSLHSRKFCTLILQEGAVPPVVALSQFGTPRAKEKAQQLLSHFRSQREGASGRGKS 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03132 803 CDD RING-Ubox_PUB 243 295 IPR045210 -
Mepo3g03132 803 Coils Coil 129 149 - -
Mepo3g03132 803 SMART Ubox_2 245 308 IPR003613 GO:0004842|GO:0016567
Mepo3g03132 803 SUPERFAMILY RING/U-box 240 316 - -
Mepo3g03132 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 316 IPR013083 -
Mepo3g03132 803 Coils Coil 190 217 - -
Mepo3g03132 803 SUPERFAMILY ARM repeat 516 790 IPR016024 -
Mepo3g03132 803 MobiDBLite consensus disorder prediction 347 436 - -
Mepo3g03132 803 Gene3D - 464 592 IPR011989 -
Mepo3g03132 803 ProSiteProfiles U-box domain profile. 241 315 IPR003613 GO:0004842|GO:0016567
Mepo3g03132 803 Pfam Armadillo/beta-catenin-like repeat 588 627 IPR000225 GO:0005515
Mepo3g03132 803 Pfam Armadillo/beta-catenin-like repeat 631 668 IPR000225 GO:0005515
Mepo3g03132 803 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 640 682 IPR000225 GO:0005515
Mepo3g03132 803 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 681 722 IPR000225 GO:0005515
Mepo3g03132 803 FunFam RING-type E3 ubiquitin transferase 239 315 - -
Mepo3g03132 803 Gene3D - 593 798 IPR011989 -
Mepo3g03132 803 FunFam RING-type E3 ubiquitin transferase 501 796 - -
Mepo3g03132 803 PANTHER U BOX DOMAIN-CONTAINING 35 791 - -
Mepo3g03132 803 MobiDBLite consensus disorder prediction 347 423 - -
Mepo3g03132 803 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 558 600 IPR000225 GO:0005515
Mepo3g03132 803 Pfam U-box domain 242 313 IPR003613 GO:0004842|GO:0016567
Mepo3g03132 803 SMART arm_5 588 628 IPR000225 GO:0005515
Mepo3g03132 803 SMART arm_5 547 587 IPR000225 GO:0005515
Mepo3g03132 803 SMART arm_5 629 669 IPR000225 GO:0005515
Mepo3g03132 803 SMART arm_5 670 709 IPR000225 GO:0005515
Mepo3g03132 803 SMART arm_5 710 750 IPR000225 GO:0005515
Mepo3g03132 803 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 599 641 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03132 Mepo-Chr3 41409283 41414595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03132 7 803 U-box Gene Family AT3G54790 52.120 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03132 - - gmx:100804684 1114.75