Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03119 ATGGATTTTGATTCTCCTCTCTTCCAAAACCAAAATCAAAACCTTATGTACTTCCCTAATAATTTCTCTTGGGAACTAGAAGAAGATTTTGTTAACTTCTTTAGTGATGACATCAACTTCAACAACCACTCACAATCACAAACAAATGAATCATTATCATCAACGGAATCAAACTCTTCTGTATCCGTACTAAGCAATGAACCACTAGAAGTTTCATCTAATACATCTTATACACAAGTGATCAAAGGGACACAAACATCATCATCACCTCTACCGCTGCCGATTAAGGAAAGCAAGAAAAGAGCATTTAGAGGAGTAAGAACTAGGCCATGGGGAAAATTTGCAGCGGAGATAAGAGATTCAACAAGAAAAGGTGTTAGAGTGTGGATTGGAACATTTGACACGGCCGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTTTTCAACAAGAGGTTCATTGGCAGTGTTGAATTTTCCAGTGGATGTAGTGAGAGAATCACTTAAAGAAATGGCTAGTAATTCTAAGCCTTTGGAAGAAGGTACTTCACCTGTATTGGCACTCAAAAGAAAACATATCATGAGAAAAAAGTCCAATAAGGTAAGTACAAAGAAAATCAAAAGTGAATATCATAGTGATCAAATTCAGATTGAGGCTAATATTAATTCTCAAAATGTGTTTGTTTTTGAGGATTTGGGTGCTGAATATCTGGACCAACTATTGAGCTTAACTTATTAG 738 0.3618 MDFDSPLFQNQNQNLMYFPNNFSWELEEDFVNFFSDDINFNNHSQSQTNESLSSTESNSSVSVLSNEPLEVSSNTSYTQVIKGTQTSSSPLPLPIKESKKRAFRGVRTRPWGKFAAEIRDSTRKGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPVDVVRESLKEMASNSKPLEEGTSPVLALKRKHIMRKKSNKVSTKKIKSEYHSDQIQIEANINSQNVFVFEDLGAEYLDQLLSLTY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03119 245 MobiDBLite consensus disorder prediction 44 67 - -
Mepo3g03119 245 Gene3D AP2/ERF domain 102 163 IPR036955 GO:0003700|GO:0006355
Mepo3g03119 245 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Mepo3g03119 245 SUPERFAMILY DNA-binding domain 103 162 IPR016177 GO:0003677
Mepo3g03119 245 FunFam Ethylene-responsive transcription factor 2 101 161 - -
Mepo3g03119 245 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Mepo3g03119 245 CDD AP2 103 162 IPR001471 GO:0003700|GO:0006355
Mepo3g03119 245 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Mepo3g03119 245 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Mepo3g03119 245 PANTHER DNA-BINDING DOMAIN 54 241 IPR044808 GO:0003700|GO:0009873
Mepo3g03119 245 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03119 Mepo-Chr3 41294838 41295976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03119 79 242 AP2-EREBP Transcription Factor Family AT3G23240 51.786 3.95e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo3g03119 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03119 K14516 - gmx:100779524 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03119 3 41294838 41295976 Mepo3g03119 3 41294838 41295976 ECH
Mepo3g03119 3 41294838 41295976 Mepo4g02796 4 36662068 36663073 PCT