Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03117 ATGGATATACAAGAACTCACATCCAATATTACATACAATGGCCACGTTGAAGAAGAAAACTCACCACCATCACTTCTTCCAAAAACCCTAAATCCAGAACCATGTAAAAGCACAAACCAATCACACGTGAATCCAACAAAACGAGAGAAGAGGCTCTATAGAGGAGTAAGGACACGACCGTGGGGAAAATTCGCAGCAGAGATAAGGGACACAACAAGGAATGGTGTTAGAGTGTGGATTGGAACATTTGATACAGCTGAAGCAGCTGCTTTAGCTTATGACCAAGCAGCATTCTTAACACGAGGATATAGGGCTATCCTTAACTTCTCCGAGCATGTTGTGAAGGAGTCTCTTCAAAACATGAATTTTAAGACATTGTTAAATCGTGGTTGCTCACCTTTATTGGAACTAAAAAGAATGCATGTCTTGAGAACAAGGTCTAAGACTAGTAGTAAAAAGGGTAAAAGGGATTCCAAGAGTGTGGTGTTGAACAATGCTCAAAATGTGTTGGTGTTGGAAGATTTGGGTTCTGAATATCTAGAGCAACTTTTGATGAGTTCCGTTTCCCTTGAAGGTGTTGGAAATCATCAAGTCTTTATTCAAAGCTAA 609 0.399 MDIQELTSNITYNGHVEEENSPPSLLPKTLNPEPCKSTNQSHVNPTKREKRLYRGVRTRPWGKFAAEIRDTTRNGVRVWIGTFDTAEAAALAYDQAAFLTRGYRAILNFSEHVVKESLQNMNFKTLLNRGCSPLLELKRMHVLRTRSKTSSKKGKRDSKSVVLNNAQNVLVLEDLGSEYLEQLLMSSVSLEGVGNHQVFIQS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03117 202 MobiDBLite consensus disorder prediction 14 47 - -
Mepo3g03117 202 Pfam AP2 domain 53 98 IPR001471 GO:0003700|GO:0006355
Mepo3g03117 202 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Mepo3g03117 202 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Mepo3g03117 202 PANTHER DNA-BINDING DOMAIN 37 185 IPR044808 GO:0003700|GO:0009873
Mepo3g03117 202 SMART rav1_2 52 116 IPR001471 GO:0003700|GO:0006355
Mepo3g03117 202 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Mepo3g03117 202 Gene3D AP2/ERF domain 52 112 IPR036955 GO:0003700|GO:0006355
Mepo3g03117 202 FunFam Ethylene-responsive transcription factor 2 51 111 - -
Mepo3g03117 202 CDD AP2 53 112 IPR001471 GO:0003700|GO:0006355
Mepo3g03117 202 ProSiteProfiles AP2/ERF domain profile. 52 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03117 Mepo-Chr3 41264260 41264868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03117 36 187 AP2-EREBP Transcription Factor Family AT3G23240 51.220 1.20e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo3g03117 AP2 4.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03117 K14516 - gmx:100818907 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03117 3 41264260 41264868 Mepo3g03117 3 41264260 41264868 ECH
Mepo3g03117 3 41264260 41264868 Mepo4g01522 4 20098376 20098645 PCT
Mepo4g02801 4 36775645 36776289 Mepo3g03117 3 41264260 41264868 PCT