Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03115 ATGGAAGATGAAAGAAAGAAAAAGTTGAGTGAAGGTGAATTACCAAAGCAAATTAAGTATAGAGGAGTAAGGATAAGGCCATGGGGAAAATTCGCAGCAGAGATTCGAGATTCGGCTAGGCATGGTGCTCGTGTTTGGCTTGGTACATTTAACACTGCTGAGGAAGCTGCAAGAGCTTATGATCGCGCTGCTTTTGATATGAGAGGTTCTTCTGCTATTCTCAATTTTCCTCATGAACATTTTCCATGCAATGTGGCTTATAATCCTTCTAAGCCCTCTTCTTCATCCAATTCAACCTCATCATCATCTTCAAAATCGGAGCTTGGTGAACAAGTTATAGAGTTTGAGTATTTGGATGAAAAATTATTAGAGGAACTCTTGGATCCTGAGAATACCATCAATCACAACTGGTTCAAGTAG 420 0.3976 MEDERKKKLSEGELPKQIKYRGVRIRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFDMRGSSAILNFPHEHFPCNVAYNPSKPSSSSNSTSSSSSKSELGEQVIEFEYLDEKLLEELLDPENTINHNWFK 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03115 139 MobiDBLite consensus disorder prediction 87 108 - -
Mepo3g03115 139 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Mepo3g03115 139 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Mepo3g03115 139 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Mepo3g03115 139 SUPERFAMILY DNA-binding domain 19 79 IPR016177 GO:0003677
Mepo3g03115 139 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Mepo3g03115 139 PANTHER DNA-BINDING DOMAIN 11 128 IPR044808 GO:0003700|GO:0009873
Mepo3g03115 139 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Mepo3g03115 139 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Mepo3g03115 139 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Mepo3g03115 139 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03115 Mepo-Chr3 41254720 41255139 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03115 16 130 AP2-EREBP Transcription Factor Family AT3G23230 63.333 3.74e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo3g03115 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03115 - - cam:101512924 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03115 3 41254720 41255139 Mepo3g03115 3 41254720 41255139 ECH
Mepo4g02802 4 36794466 36794993 Mepo3g03115 3 41254720 41255139 PCT