Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03112 ATGGCACAATCTTCTTCACACTATGCTTTACTCATATTTGTCATTGTTGTACTAAGTATCTTGGTCACTACTTTCATATTTATCACCTACTTGATTTTTGTGACCAAATGCTGCTTAAATTGGCACCCATTGAGATGGATTTCAATCCTGCCACCTCCACAGAATGAAGAACCCTTCATAGCATTCTCTCCAAGGATTTGGACTCGCGGCGTCGATGAATCTGTCATCCAAGAAATTCCAACATTTCAATTCACAAAAGGAGAAGGTGATGATGATAATCATCAAAGCGTAAAGGGTTGTGTTGTATGTTTGAATTCTTTCCAAGAACAAGATATGCTAAAAGTACTTCCTAATTGCAGCCACCACTTTCACTTGGATTGCATTAACATTTGGCTTCAAACAAATGCAAACTGCCCTCTTTGTAGAACAAGCATTTCAGGTAACACACCGTTTCCGATGAACCGTATCATAGCAGCACCAAGCTCTTCTCCACAGGATTCTCAGTTACTCTCTAACATGGGTAGTGATGAAGATTTTGTGGTCATTGAATTGTGGGGAAATGGAGAGAATCGGGGAACACGGTCTCAGATTCAGCAAGAGCGAAATGAGTCAAGGGAAAGACTAGAAACACTGAGTAGAACTCACTCTACAACTAGGAAAGCGGAGGAGGAGATGAAGGTAGTGCAGTTGAAACCATGGAAGTGCCACCGTGGTTCGATAATGGGTGATGAGTGTATTGATGTTAGAAAAAAAGACGATCAATTTTCAATTCAGCCTATCAGAAGATCCTTCTCATTGGATTCGGCAAGTGATAGAAAAGCTTATGTAGATGTTCAACACATCATCCAACAGAATAATAGGCATCAAAAGGAGGATTGTGGAATCAACGGTGAGGGCTGTAGCTATGAAGATTGTAATAGCGGTAGTAACAGGGGTCGAAGATCTTTCTTTCCATTTCGTTATGGTAGGGTATAA 975 0.4062 MAQSSSHYALLIFVIVVLSILVTTFIFITYLIFVTKCCLNWHPLRWISILPPPQNEEPFIAFSPRIWTRGVDESVIQEIPTFQFTKGEGDDDNHQSVKGCVVCLNSFQEQDMLKVLPNCSHHFHLDCINIWLQTNANCPLCRTSISGNTPFPMNRIIAAPSSSPQDSQLLSNMGSDEDFVVIELWGNGENRGTRSQIQQERNESRERLETLSRTHSTTRKAEEEMKVVQLKPWKCHRGSIMGDECIDVRKKDDQFSIQPIRRSFSLDSASDRKAYVDVQHIIQQNNRHQKEDCGINGEGCSYEDCNSGSNRGRRSFFPFRYGRV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03112 324 PANTHER RING-H2 FINGER PROTEIN ATL16 3 323 IPR044600 GO:0016567|GO:0016740
Mepo3g03112 324 Pfam Ring finger domain 100 142 IPR001841 -
Mepo3g03112 324 Coils Coil 194 214 - -
Mepo3g03112 324 MobiDBLite consensus disorder prediction 191 220 - -
Mepo3g03112 324 SMART ring_2 100 141 IPR001841 -
Mepo3g03112 324 SUPERFAMILY RING/U-box 76 148 - -
Mepo3g03112 324 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Mepo3g03112 324 MobiDBLite consensus disorder prediction 196 220 - -
Mepo3g03112 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03112 Mepo-Chr3 41236670 41237910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03112 4 288 C3H Transcription Factor Family AT1G04360 43.046 7.32e-72 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03112 K19041 - psat:127126067 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03112 3 41236670 41237910 Mepo3g03112 3 41236670 41237910 ECH
Mepo3g03112 3 41236670 41237910 Mepo4g01524 4 20127949 20129298 PCT
Mepo4g02810 4 36898862 36900077 Mepo3g03112 3 41236670 41237910 PCT